Protein

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Genbank accession
AUR93847.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSCEDFPTIQTAKTYKLDAETTNEVITLDSDRTSEASDGKTKKTFWGIEKDATNQLADIQQRADEQYSDINNQYILRNKGDYATDPLLEFYYEFTDFNGLIYFPIVAPYQVDSATYPDPSSDPNLRLGQATDDSLITATGSTTPRRLDDRFADTVNAKDFGAIGGGVVDDTAAIQAAIDTGRQVILPSGDYAVSSLLVDCPFRITGAGRLLISGNISLTDNCTSVHIENISIVGGGGIITATSSSIVGMVRVNNLTMQDCQTGIHLLGRASNVVVQNSTFLNLHRTSGATNCQALRVGNNVSSDAEESVGITFDNNFVSGVLNDFDTETHAVLIYGRNVHISNNHIENVYHSFERACEAIYLKSVNSTVTGNTILDCGPSDDGCISVKGTDYSDASSPSSFENIIQGNTVRYTSEDKQVIGVSAQSVNSTVSNNTLYNCYLRLFSTERISAVGNVIDITSDGIFNFCMEISNASDVAVMGNTFMIRINNFTANTFESVRVRNTSSEDMSKVVIQDNKFITDLPDLNTGANAIASISVWSEVSAINDALMIGNEFSINAPQAQSAAKVAPFHFQGAFGISSTMKDNIALDTSNLFIDTSTSLNYSIYNNVISSIDVSTSNLGLLNNSGVTITNTNATADRLVYPENAIPGAKLTVKCTHPAYAMTVNTVGTGQFYDGSTTRIVSPGETLNMECVSSGYWLA
Physico‐chemical
properties
protein length:700 AA
molecular weight: 75351,54470 Da
isoelectric point:4,44148
aromaticity:0,07714
hydropathy:-0,13057

Domains

Domains [InterPro]
DC_0489
STR
1–696
DC_0489
IPR011050
STR
152–439
IPR011050 IPR006626
IPR012334
STR
154–423
IPR012334 IPR006626
IPR024535
ENZ
155–378
IPR024535
IPR006626
Unmapped
222–242
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
AUR93847.1
1 700
Architecture
STR
STR 1-696 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR93847.1
1 700
Domain Start End Length (AA) Confidence
N-terminal 1 170 170 0,9851
Central domain 171 613 444 0,9899
C-terminal 614 700 86 0,9694
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-170
Central
171-613
C-terminal
614-700

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.189.B._10N.286.51.B5
[NCBI] 		1881220 No lineage information
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR93847.1 [NCBI]
Genbank nucleotide accession
MG592557.1 [NCBI]
CDS location
range 16521 -> 18623
strand +
CDS
ATGAGCTGCGAAGATTTCCCAACAATACAGACGGCAAAGACTTACAAGCTCGATGCTGAAACCACTAACGAGGTCATCACATTAGATAGTGACCGCACGTCAGAGGCGAGTGACGGAAAGACAAAAAAAACATTCTGGGGCATTGAGAAAGATGCGACAAACCAACTTGCAGATATTCAGCAGCGAGCGGATGAGCAATACTCTGATATCAACAATCAGTATATTCTACGCAACAAGGGCGATTACGCAACAGACCCGCTGCTTGAATTTTACTATGAGTTTACTGATTTCAATGGGTTGATTTACTTCCCTATCGTTGCTCCCTATCAGGTTGATAGCGCTACATACCCAGACCCATCAAGTGACCCTAATTTAAGGTTAGGCCAGGCGACAGATGATAGCTTGATCACGGCAACAGGAAGTACAACGCCTAGAAGACTTGATGATAGGTTTGCCGATACAGTTAATGCTAAGGACTTTGGCGCTATCGGTGGAGGAGTTGTAGATGATACCGCTGCAATCCAAGCTGCAATTGATACTGGTCGCCAAGTTATATTGCCGAGCGGTGATTATGCTGTTAGCTCGCTCTTGGTAGATTGCCCATTTAGAATTACTGGCGCTGGAAGGCTTTTGATTTCTGGAAATATATCGCTAACAGATAATTGCACATCAGTTCATATTGAGAATATCAGCATTGTTGGCGGCGGTGGAATTATCACCGCTACATCCAGCTCAATAGTTGGGATGGTTCGCGTGAACAACTTGACAATGCAAGACTGCCAGACTGGCATACACTTGCTTGGTAGGGCGTCTAATGTTGTCGTGCAAAACTCAACATTTTTAAATCTTCACAGAACATCTGGCGCAACAAACTGCCAGGCATTAAGGGTCGGAAATAACGTTTCTTCAGATGCCGAAGAAAGCGTTGGAATTACTTTTGATAATAATTTCGTGAGCGGGGTACTTAATGACTTTGATACCGAGACTCATGCAGTCTTAATTTATGGCAGGAATGTGCACATTAGTAATAACCACATTGAAAATGTGTATCATTCTTTCGAGCGAGCATGTGAAGCTATTTATTTGAAATCAGTTAACTCAACTGTAACTGGCAATACCATTCTTGATTGTGGCCCAAGTGATGACGGATGCATTAGCGTCAAGGGAACTGACTACTCAGACGCAAGCTCACCAAGCTCTTTTGAGAATATAATCCAAGGCAATACTGTGCGATATACTAGTGAAGATAAACAAGTAATAGGTGTGTCAGCTCAGTCGGTAAACAGCACTGTCTCAAACAATACCCTTTATAACTGCTATTTGCGCTTATTCTCAACTGAAAGAATCAGTGCTGTAGGGAATGTAATTGACATCACATCCGACGGCATTTTTAATTTCTGTATGGAGATATCGAACGCTAGTGATGTTGCAGTAATGGGGAATACATTTATGATCCGAATAAATAACTTTACCGCAAACACTTTTGAGTCTGTTCGAGTTCGCAATACATCAAGTGAAGACATGAGCAAGGTGGTCATTCAGGATAACAAGTTCATAACTGACCTGCCTGATCTGAATACTGGAGCCAATGCTATAGCATCGATATCAGTCTGGTCTGAAGTGTCAGCAATAAATGACGCATTAATGATCGGAAATGAATTCTCAATAAATGCACCTCAAGCACAATCTGCTGCAAAAGTCGCGCCTTTTCACTTTCAGGGAGCTTTTGGTATCTCTTCAACAATGAAGGATAACATAGCATTAGACACTAGCAACTTATTTATAGATACTAGCACAAGCCTTAATTACAGTATTTACAATAACGTAATATCAAGTATAGACGTGTCAACATCAAACCTTGGGCTGCTAAATAATTCTGGAGTAACAATTACCAATACAAACGCTACAGCAGATAGATTAGTTTACCCAGAAAACGCAATACCTGGAGCAAAACTTACAGTCAAGTGCACACACCCAGCATATGCTATGACCGTAAACACAGTTGGCACTGGTCAGTTCTATGACGGATCAACTACCAGGATAGTCAGTCCTGGCGAAACATTGAACATGGAATGCGTTAGCTCAGGCTACTGGCTGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
be38298e3682293012168e28681ca46eb4b3886a0279c1e75423ff0d642d65b1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8326
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank