Protein

View in Explore
Genbank accession
AFL46947.1 [GenBank]
Protein name
putative phage tail protein
RBP type
TF
Evidence RBPdetect2
Probability 0,95
TF
Evidence Phold
Probability 1,00
Protein sequence
MEQFKKKRLPLLIAGAGGKKSSSSSRTPVEADDTVNSRAMASILDLLGEGVIGGLVNGAKSIFIDDLPILNEDGSANYSGITWDFRDGSQDQTPMDGFDFVETPKSINIQLKKTHEVTVSIDNDEADRVRVILKFPSLRSVDKKSGDTNGTAVKYKFQIANGDGTFADVVAEGEKSVEVALTAKKTGVYYRSYELKLPKPGRAYKVRVIRLTDDSKTQYLYNDTWVDSIGEIVDTPMNYPNSALVGLKVNSEQFGSSMPSRSYLVRGLKIRVPSNYNENTNTYVGVWDGTFKLLSSSNPAWILFDVLTNARYGLGQFVSESMIDLGQMYQIGRYCDEEVVDGFGGKEKRFAINTQITSRQDAYRLIQDIAGAFRGMVFWAGGMVNVMQDSPSDPVMMFTNANVKDGLFSYKGSARKDRPSVALVTYNNKEDGYKQNIEYVEDQEAMRRYGERKTEVVAFGCTSRGQAHRVGLWLLYTARMESDVITFTAGLDASFLMPGETVLIQNKYRSGKRNSGRIMSFNKNSITLDAPVSLKKSGSYIRILNQEGKIVERDILETGENITKVTFSKSLASGEMPVMNGIWTITEPDLEPMRVRVINVAQGDAQGSFDVTVVQNNPSKYEAIDNGATLIPENNTVLDPTYSKPTNLQVTEGTYISSPGNLSIKLIATWEGKSAEYWISWRRSDENNVSNWQSARVTEEQYEIINIAENGQYDIQLYAVSFSGKKTEIISTVYKVQGTMTPPGAPTALTAVGDYRNVILNWVNPDSIDLDHINVYASQTNDLDTAKLIAEAASTTFTHAGLGDSETWFYWVRAANKRGMLSPPNSNLGTEAMTKDVLSFLTGKITSSELGQELLEEIDSKVSQEAVDSIYQQMEESLKDLDDKLTAADQRLEEAQNGLKTEVSGTLDKVNDALQQVEDSNAALVELQETVSEQGKAVAGAVEAAHAALDNASALIAEEREARVEGDMANAKQIEAMKSSVDDSVAAVEEMKKTVAEVERASAEVTTNIEALAKTNIDLALRQDEDQHKQMVNNAKIATTQKTFADDMSAMASKVEEIRAEIGEDIRASITEETTARVEADKAIATQITKLEAQINDDIAAAIVTEQEARATADESLSKQITTLQAKVEGDISAALAEEQIARATADESLAQQITTLKAQTGADIKAAVAEETKARTDADSALAGQITDLQAQTGKDISAAITSEATARAEADKALGGRIDTIKAEVDGNSATIQQQAQAIADTNKKVSTAWTLKMETSTSGGQKYVAGIALGIDSTGLSQFLVQADRFGLVNSVNGKITTPFVVENSVAYMNGAFIKDGTITNAKVGDLQSTNFVSGRSGWRFGKNGVLEINGNSGGNGRLVINGQRIDVYDDNNVLRVRIGLL
Physico‐chemical
properties
protein length:1385 AA
molecular weight: 150769,85550 Da
isoelectric point:4,82798
aromaticity:0,06498
hydropathy:-0,36123

Domains

Domains [InterPro]
IPR053171
1–1110
IPR053171 IPR015406
IPR055385
101–235
IPR055385 IPR032876 IPR003961 IPR013783 Coil Coil Coil
IPR003961
644–744
IPR003961
IPR036116
665–822
IPR036116
AFL46947.1
1 1385
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SSU5
[NCBI] 		1177632 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
[NCBI] 		99287 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFL46947.1 [NCBI]
Genbank nucleotide accession
JQ965645 [NCBI]
CDS location
range 17749 -> 21906
strand +
CDS
ATGGAACAGTTCAAGAAGAAAAGGCTGCCTCTCCTGATCGCAGGTGCAGGCGGCAAGAAAAGCAGCAGCTCCAGCCGCACGCCGGTTGAAGCCGATGATACCGTTAACTCGCGTGCTATGGCGTCTATCCTCGACTTGCTCGGGGAAGGCGTTATTGGCGGTCTTGTCAACGGGGCAAAGTCGATTTTCATCGACGACCTGCCGATTCTCAATGAAGACGGCTCTGCCAACTACAGCGGTATTACTTGGGACTTTCGTGACGGCTCGCAAGACCAGACGCCGATGGACGGTTTCGATTTTGTTGAAACGCCCAAATCCATCAACATTCAGCTGAAAAAGACACATGAGGTGACAGTCTCCATCGATAACGATGAAGCTGACCGCGTTCGAGTCATCCTCAAATTTCCCTCTCTGCGTAGCGTGGATAAGAAATCGGGTGACACCAACGGCACAGCAGTCAAATACAAGTTTCAGATCGCCAATGGCGATGGAACATTTGCTGATGTAGTTGCTGAAGGCGAGAAAAGTGTTGAAGTTGCCCTGACAGCGAAGAAGACAGGTGTTTACTACCGCAGCTACGAACTCAAACTGCCGAAACCTGGCCGTGCATACAAGGTTCGTGTCATACGCCTAACCGACGACAGCAAAACTCAGTATCTCTATAACGATACGTGGGTGGACTCCATCGGTGAAATCGTCGATACGCCAATGAACTATCCGAACTCTGCGCTTGTTGGACTCAAGGTTAACTCCGAGCAGTTCGGTAGCTCTATGCCTTCTCGTTCGTATCTGGTGCGTGGTTTGAAAATCCGCGTGCCGTCAAACTACAACGAGAATACCAATACCTATGTTGGTGTTTGGGACGGTACGTTTAAGCTGCTGTCATCCTCTAACCCAGCCTGGATTCTCTTCGACGTTCTGACCAACGCTCGATATGGCCTTGGGCAGTTTGTCTCTGAGTCCATGATTGATCTTGGACAGATGTATCAGATCGGTCGCTATTGCGACGAAGAGGTTGTCGATGGTTTCGGCGGCAAGGAGAAGCGTTTCGCCATCAACACCCAGATAACCAGCCGGCAGGATGCCTATCGACTGATTCAGGATATCGCTGGCGCCTTCCGCGGTATGGTCTTCTGGGCTGGTGGAATGGTCAACGTCATGCAGGACAGCCCGTCAGATCCGGTCATGATGTTTACCAACGCAAACGTCAAAGATGGCCTGTTTAGCTATAAAGGTTCAGCTCGTAAAGATCGTCCTTCCGTTGCGCTTGTCACCTATAACAACAAAGAAGACGGCTACAAACAGAACATCGAGTACGTCGAAGACCAGGAGGCGATGCGTCGTTATGGCGAGCGCAAAACCGAAGTGGTTGCGTTCGGTTGTACCAGCCGTGGCCAGGCGCATCGTGTCGGTTTGTGGTTGCTGTATACCGCTCGCATGGAGTCTGACGTTATTACCTTTACTGCAGGTCTTGACGCTTCGTTCTTAATGCCTGGTGAAACCGTGCTGATCCAGAACAAGTACCGTTCGGGCAAGCGCAACTCCGGTCGCATTATGTCCTTTAACAAGAACAGCATCACATTAGACGCACCAGTATCGTTGAAGAAAAGCGGCAGCTACATTCGCATCTTGAACCAGGAAGGCAAGATCGTCGAACGCGACATTCTGGAGACGGGGGAGAATATCACTAAAGTGACGTTCTCGAAGTCTCTGGCATCCGGCGAAATGCCAGTAATGAATGGCATCTGGACTATCACCGAACCAGACCTGGAGCCAATGCGAGTACGCGTTATCAACGTTGCGCAGGGTGATGCTCAAGGGTCTTTCGATGTGACGGTCGTCCAGAATAACCCTTCGAAGTACGAAGCGATAGACAATGGGGCGACGCTGATTCCGGAGAACAACACCGTTCTCGATCCAACATACTCGAAGCCGACAAACCTGCAGGTGACGGAAGGAACGTATATTTCCAGCCCTGGCAACCTTTCCATCAAGCTTATTGCGACCTGGGAAGGTAAGTCTGCTGAATATTGGATCAGTTGGCGTCGCTCGGACGAGAACAACGTTTCTAACTGGCAGTCCGCGCGTGTCACTGAAGAGCAGTACGAAATCATCAATATTGCCGAGAATGGCCAATATGATATCCAGCTTTATGCTGTGTCATTCAGCGGCAAAAAGACTGAGATCATCAGTACAGTCTATAAAGTTCAGGGAACGATGACACCGCCAGGCGCACCGACTGCGTTGACAGCCGTGGGTGACTATCGCAACGTGATTCTGAATTGGGTTAACCCTGATTCAATCGATCTCGACCACATCAACGTGTATGCGTCACAGACCAACGACCTGGACACCGCAAAACTGATTGCCGAGGCCGCCAGTACTACTTTCACCCATGCAGGTCTGGGGGATAGCGAAACGTGGTTCTATTGGGTTCGCGCGGCAAATAAGAGAGGCATGTTGAGTCCGCCAAACTCCAATTTGGGTACCGAGGCGATGACAAAGGATGTTCTCTCATTCCTGACAGGGAAAATCACATCTTCTGAGTTGGGACAGGAGTTGCTTGAGGAAATCGACTCTAAGGTTTCTCAGGAGGCTGTTGATTCTATCTATCAGCAGATGGAAGAGAGCCTCAAAGATCTCGATGACAAGTTGACGGCGGCAGATCAGAGACTAGAAGAAGCGCAAAACGGGCTTAAAACGGAAGTGTCCGGCACTTTGGATAAGGTCAATGACGCTCTGCAACAGGTTGAAGATTCCAATGCGGCTTTAGTTGAGTTACAGGAAACTGTATCCGAGCAGGGCAAAGCCGTAGCTGGCGCGGTCGAAGCAGCTCATGCAGCACTCGATAATGCCTCTGCATTGATTGCCGAAGAACGTGAGGCCCGAGTAGAAGGCGATATGGCGAACGCCAAACAGATTGAGGCGATGAAGTCTTCTGTTGACGATAGCGTTGCTGCTGTTGAAGAGATGAAGAAAACTGTGGCCGAAGTCGAGCGAGCCAGCGCGGAAGTGACCACCAATATTGAGGCATTGGCCAAAACCAATATCGATCTTGCTCTGCGTCAGGATGAAGACCAGCACAAGCAGATGGTCAATAACGCGAAGATTGCCACCACTCAGAAGACGTTTGCCGACGATATGTCTGCAATGGCCTCGAAAGTGGAAGAGATCCGCGCAGAAATTGGTGAAGATATTCGCGCTTCTATCACTGAAGAAACGACGGCTCGTGTTGAGGCTGATAAGGCTATTGCGACCCAAATAACCAAGCTTGAAGCTCAGATTAACGACGATATCGCTGCGGCAATTGTGACCGAACAAGAGGCTCGTGCAACAGCGGATGAGTCGTTGTCGAAGCAGATCACAACATTGCAAGCGAAGGTTGAGGGAGATATCAGCGCGGCGCTGGCCGAAGAGCAGATTGCAAGAGCGACCGCCGACGAATCGTTGGCGCAACAAATCACAACACTAAAGGCCCAAACAGGCGCCGACATTAAGGCGGCTGTTGCGGAAGAAACGAAAGCCAGAACCGATGCCGACTCTGCGCTGGCAGGGCAAATCACCGATTTGCAGGCTCAGACAGGAAAAGATATCAGTGCCGCAATTACTTCTGAAGCAACTGCACGCGCGGAAGCCGATAAAGCACTAGGTGGTCGTATTGATACGATTAAGGCTGAAGTAGACGGCAACTCGGCCACTATCCAGCAGCAGGCCCAGGCAATTGCCGATACCAACAAAAAGGTTTCGACAGCGTGGACGCTTAAAATGGAGACTTCCACGAGCGGTGGCCAGAAATATGTTGCCGGTATCGCGCTGGGCATTGATAGCACAGGTCTTTCTCAGTTCCTTGTTCAAGCAGACCGCTTTGGTCTTGTGAACTCGGTTAACGGGAAAATCACCACACCGTTTGTGGTCGAAAACAGCGTTGCTTACATGAACGGCGCTTTTATCAAGGATGGAACAATCACCAACGCCAAAGTTGGCGACCTACAGTCCACCAACTTTGTCTCTGGCCGTTCGGGATGGCGCTTTGGGAAAAATGGCGTGCTGGAGATCAACGGTAATAGTGGCGGTAACGGTCGTCTGGTCATCAACGGCCAGCGTATCGACGTCTATGACGACAACAACGTTCTCCGAGTGAGGATTGGGCTTCTTTGA

Tertiary structure

PDB ID
73d2000b6968b4d62f4deee2f823278edd56f014632f5cd678046c2912b8146f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6927
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Bacteriophage SSU5 Specific for Salmonella enterica serovar Typhimurium Rough Strains Kim,M., Kim,S. and Ryu,S. 2012 22966187 GenBank