Protein

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UniProt accession
H9EDD0 [UniProt]
Protein name
Neck passage structure protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MSLDNFKNRTIIWDTVNKDFPQPIQIMQGDVNARTLSVKIIDNGGEIDLTGHSLKLTYQYTNSSNSGFVMIPPENLTKGEFILVIPTEMTETGVIEANLILLNEDKEQVIVSKNLTFISDNSTVSDLAQEVNNNIDDFTKLLLENMPQVMRSELNDLHIKTDSNTSNIERKANLADVTNLRNTVNSQGIEISTLENKVSALSSGVPKEVSLVSSMTDKTKNYVYTGTEPGYTPGNWYYWNGTIWAPGGTYQATAIDLDVDGIRIFTPSKTTGAINPFNGTITTTEGVVYYTVDVSNGAEKLTFYSESFGSNYGYAFYNGSGAFIPGTGQLEKFEGYQTIDVPVSATTFRVTSRLETNQNVTLFKANSSVQKNAKNINDNFVKSYGNKKLLKSKDYQHAPLLISSTTGRWVKVNNSSAVLIPISDVGKAVKIMSNALNSSSYTFLKTATGNSGDLADFATSYKGIKKLSVGEYATLQVPSDAGFLYVTNSFDDGSIHDVYPKVTPMLDTIVTVAASNSSALDKSRADYVATGANDQDVINQAITSLVYGGTIKLFDGDYNIDAFGDTKTAIYFPNNGYARTINFEGSTENKSFLSENGVTIHVTKTAFDSLPTTGDYNVFAGDGTTLPIGVWQGFANNVNFKNFYLKLYTSQRQMVGINGQNFGSMYIEQVGVYSESYFTDRFNRYKPVTPDINSIGIISVGGANDEMARIGMDTVNVGGLGTGIIIARAEHLIVKNSTVSRSVIGYKFSGNADKPLTLINNADEGNTHLPVFAGTGLITSIDFSIERLDPGVFPNDPSGDTNPFAKELTPGGWKGTFDFNIQGSGAGINHFWQSGSGRNIKTKKISSAISGTVNPSNPEYLQEFFRTDLNKKLTFNGNSWVDSIGNIV
Physico‐chemical
properties
protein length:888 AA
molecular weight: 96671,65750 Da
isoelectric point:5,09587
aromaticity:0,10023
hydropathy:-0,27173

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
10–126
G3DSA:2.60.40.3350 DC_0775
IPR018913
ATT
10–147
IPR018913
IPR018913
ATT
25–147
IPR018913
H9EDD0
1 888
Architecture
ATT
STR
ATT 10-147 | STR 148-888
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
H9EDD0
1 888
Domain Start End Length (AA) Confidence
N-terminal 1 418 418 0,8446
Central domain 419 838 421 0,8894
C-terminal 839 888 49 0,9482
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-418
Central
419-838
C-terminal
839-888

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage ASCC281
[NCBI] 		2892349 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Tertiary structure

PDB ID
7da30e5010b1ea3f88def2490361189b87e49417f75fa0e09c2d06b0876fcd7c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6968
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50