Protein

View in Explore
Genbank accession
AXH65111.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADYKLSQLNSIDTISSEDLLHIRVKKRPEMLGDEDRRMTYQDFLASFKLERFVQIAGSNMTGDLGIVKLLYGGKAVFDPTGSSEITIGDVLKTFKLNANGLKLTIADASRSATVYHTLNKPSPNELGMRTNEENDARYARLAVTNNFSIRQAIVTDGEQLTLKKATNAGASYIQGRDANNQQTWYVGQGTSNSTNVYLYNHATGSMLTLDATAAFNKSLRISGQIQPSDFSNLDARYFTQTVANQRFAQLAGNNTFTGANTFTNLVAKKNANAITLQNTDASTALYILGKKSDGTNKWYVGTDSDETRLNIYNYLTGSQISLGTTIGINKTVQITGQVQPSDWANIDSRYIPAATLSTIARTNAANTFSAQQVINSDGEALALQAKTVTSLFIRGKSADGTSKWYVGNGDASDILNLYNYKTGKGLNIGSSFEMNATLTITGQVQPSDFSNLDARYYTQSTANSRYMLAYSSGTGTEVGDSDGIAWNAKTGLYNVITKSGGSTQLVYHMYQGSSSTPAAQLKFNYNNGGFWYRSARDGYGFESAWSKIYTDKDKPTPSDIGAYTKAETDQKIADAISDSTDLNKIYPVGIVTWFNSNVNPNTALPGLTWTYLNNGVGRTIRIAAANGSDVATTGGSDSVTLAVGNLPSHTHSFSATTSSFDYGTKTSSTTGNHNHNRGTMEITGTVGYFRSDSSSFYTASGAFTLGSSTASKGFTGSNFTNGIPANFNASRTWSGVTNTTGNHSHTVGIGAHSHTVSGNTGGTGSGSAFSVTNQFYKLMAWVRTA
Physico‐chemical
properties
protein length:786 AA
molecular weight: 84406,94990 Da
isoelectric point:8,87370
aromaticity:0,09796
hydropathy:-0,40725

Domains

Domains [InterPro]
DC_0032
ATT
1–269
DC_0032 G3DSA:6.20.80.10 DC_1993
G3DSA:6.20.80.10
STR
157–218
G3DSA:6.20.80.10 DC_1993 G3DSA:6.20.80.10 IPR022246
IPR048388
ATT
158–247
IPR048388 IPR048388 IPR048388
AXH65111.1
1 786
Architecture
ATT
STR
ATT
STR
ATT 1-354 | STR 355-380 | ATT 381-470 | STR 471-782 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM-Ro111lw
[NCBI] 		2282989 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXH65111.1 [NCBI]
Genbank nucleotide accession
MH571750 [NCBI]
CDS location
range 37475 -> 39835
strand +
CDS
ATGGCAGATTACAAATTGAGTCAATTAAACTCAATCGACACAATTAGTTCAGAAGACCTATTGCACATCAGAGTTAAGAAAAGACCTGAAATGTTGGGTGACGAAGACCGTAGAATGACCTATCAAGACTTCTTAGCTTCCTTCAAACTAGAAAGGTTTGTTCAGATTGCTGGGAGCAATATGACGGGGGATTTAGGTATTGTCAAGTTACTTTACGGTGGCAAGGCTGTATTTGACCCTACAGGTTCTTCTGAAATTACTATTGGGGATGTTTTAAAGACTTTTAAACTTAACGCAAATGGTCTTAAACTAACTATTGCAGATGCTTCAAGGTCAGCAACTGTTTATCATACTCTGAATAAGCCAAGTCCTAATGAACTTGGGATGAGAACTAATGAAGAAAATGATGCAAGATATGCAAGACTTGCTGTTACAAATAACTTCAGTATTAGGCAAGCAATTGTAACTGATGGTGAGCAGTTAACTCTTAAGAAGGCAACCAATGCAGGTGCTTCATATATTCAAGGTAGAGATGCTAATAACCAGCAAACTTGGTATGTTGGACAGGGGACTTCAAACAGTACCAATGTTTATTTGTACAATCATGCTACTGGCTCAATGTTAACCCTTGATGCAACAGCAGCATTTAATAAGTCACTTAGAATCTCCGGACAGATTCAACCTTCAGATTTCTCTAACTTAGATGCTAGATACTTCACTCAGACAGTTGCTAATCAGAGATTTGCACAGTTAGCTGGCAATAATACTTTTACAGGTGCTAACACTTTCACTAACCTTGTTGCTAAGAAGAATGCTAATGCTATTACTTTACAGAATACTGATGCAAGTACAGCACTTTACATTCTCGGTAAGAAGTCTGATGGAACAAATAAATGGTATGTTGGTACAGATTCTGACGAGACACGTCTAAACATTTATAACTACCTTACAGGTTCACAGATTTCACTAGGTACTACTATTGGTATCAATAAGACTGTGCAAATCACTGGACAAGTCCAACCTTCAGATTGGGCTAATATTGACTCTAGATATATTCCGGCAGCAACATTAAGTACGATTGCAAGAACTAATGCTGCTAATACATTCTCTGCACAACAGGTTATCAACTCTGATGGCGAAGCTCTTGCGTTACAAGCAAAAACTGTAACGTCATTGTTTATCAGAGGTAAATCTGCTGATGGAACTAGCAAGTGGTATGTTGGGAATGGTGATGCCAGCGACATCTTAAACCTGTATAACTACAAGACAGGTAAAGGGCTTAACATTGGTTCATCATTCGAAATGAATGCAACTTTAACAATCACTGGGCAAGTTCAACCTTCAGATTTCTCTAACTTAGATGCTAGATATTACACGCAATCTACCGCAAACTCTAGGTATATGCTTGCTTATTCTTCTGGCACTGGTACAGAGGTAGGTGATAGTGATGGAATTGCTTGGAATGCTAAAACTGGTCTGTATAATGTTATAACGAAATCTGGTGGTTCAACACAACTGGTCTACCATATGTATCAGGGTAGCAGTTCTACACCAGCAGCTCAGTTAAAATTTAACTACAACAATGGCGGTTTTTGGTATAGGTCAGCAAGAGACGGTTATGGTTTTGAGAGTGCTTGGTCTAAAATCTATACAGACAAAGATAAACCAACCCCTTCAGACATCGGTGCATACACTAAAGCTGAAACTGACCAGAAGATTGCAGATGCAATTAGTGACTCTACAGACCTGAATAAAATCTATCCAGTAGGGATTGTGACGTGGTTTAACAGTAATGTCAACCCTAACACAGCACTTCCTGGGTTAACTTGGACGTACCTGAACAATGGTGTTGGCAGAACTATTAGAATTGCAGCAGCAAATGGTTCAGATGTTGCTACAACTGGTGGTTCAGACTCTGTAACATTAGCTGTTGGTAACTTGCCTTCACACACGCATAGTTTCTCTGCTACCACTTCATCATTTGATTATGGTACTAAGACTTCTAGCACAACTGGTAACCATAACCACAACAGAGGGACTATGGAGATTACTGGTACAGTGGGTTACTTTAGAAGTGACTCTAGCAGCTTCTACACAGCAAGTGGTGCATTCACACTTGGTAGCTCAACTGCTTCTAAGGGTTTTACTGGCTCTAACTTCACTAATGGTATCCCTGCTAACTTTAATGCGTCAAGAACTTGGTCTGGTGTAACGAATACGACAGGTAACCACAGCCACACTGTTGGTATTGGTGCTCACAGCCACACAGTTAGTGGTAACACAGGTGGTACTGGTTCTGGTTCAGCATTTAGTGTTACTAACCAGTTCTATAAGTTAATGGCTTGGGTGAGAACTGCTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b1d3864fd374ee21ae8039707b6796ffbfaafc8c2cad1407bedbfa8db06975d7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3133
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of novel bacteriophages specific to non-O157 and O157 Shiga toxin-producing Escherichia coli (STEC) in non-fecal composts Liao,Y.-T., Sun,X., Quintela,I.A., Bridges,D.F., Liu,F., Zhang,Y., Salvador,A. and Wu,V.C. 2019-04-02 — GenBank