Protein

View in Explore
Genbank accession
XYO02278.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MGGRKKGGGHTPYEAPESGQSKQFVSIVEVVSEGQIKGLVDGVKSVYLDNTPLQASDDSFNFKNVEAQGCIGTQDQDVLEGFNTSEKEIAVSTQVKKLTPITRTITDRKVSRLRLTLGVQSLFHQNDKGDVYGSKVDFTVTIGERSHLVSINGKYSSQYLKQVEFGDLPPVPFQVKVERMNADSKSQRLQNNTIWASYTEIIETQFAYPNTAILGIRFDSEYFSSIPNRTYEIYGIEMKVPSNYDPFERTYTGFWDGTFKIAWTNNPAWILYDLMTNKRYGLGWRLGEFNVDKWALYQAAQYCDQMVPDGFGGQEPRFTCNAWLTDQRKAYDVINDICSIFRAMPVWNGREFTVVMDRPADPVWTYTNANVIGGEFSYQYSAQKARHNEIHVEYVDASDSYERKIEVVSDDDLIRRHGLNVKKVTAFACTSRGQAFRTGKWILETERLETKTVTFAVGAEGLMHIPGDIIRVADCDYADTNIGGRVLAVNGRNVTLDKEISLWSNSYLTYIDGEAKHKDIRIVSKNGKEVTLESEPVGLAELGVWSLTTQEINVQLFRALTINEEKQGQYTIVALQHEPQKEAIVDNGAVFEPRETTLSTAGLDKVSHVNVQANGDGVALSFDYVVKHSAMIKYQIKLYKNGTFYKVYDDLTTPNHKFVGLPDGEYVAEIRAKNEQGQLSEAVTKSFNISFTVTELTTVSKVLGILLQWKNPVFANPNSAIEIWTNTEDRFETARKLVTLAYPTNSYSFDGLGVNETHYFWARMLDTANGNAGELTTSVVGVTESSGEKLVDYLQGQISRNAFSQALAEEITQIERTGKRNESSMRKMQVFKTETHASSGRKLVAGIGIGVDGETEESQVIISAEKFVIADPNSNTLKTPFTVSTENGQARIAIAGDLIVKNSITGDKIQANTTITSPKIEGGHIKGNTFEGGVIRGARIEGLTGKFTGELEVTQIVGGNVLEVFTCTSTFIGMSGTTYYGDNPRYHIRYMRKIVKVLINSANVDRELFIIDPLSSISGRTYTSTFRRSSGKSDGDYYASETRFMPGIINLQARITLPNGVINEYKRSISIPRNETCAIDISYETLSDTSVNEDTFTFIAVVKSTSSKTISKV
Physico‐chemical
properties
protein length:1113 AA
molecular weight: 123953,81710 Da
isoelectric point:5,68921
aromaticity:0,09614
hydropathy:-0,35418

Domains

Domains [InterPro]
DC_0014
STR
1–1112
DC_0014
IPR053171
Unmapped
4–813
IPR053171 IPR015406
IPR055385
ATT
85–203
IPR055385 IPR032876
XYO02278.1
1 1113
Architecture
STR
ATT
STR
ATT
STR
STR 1-84 | ATT 85-203 | STR 204-324 | ATT 325-485 | STR 486-1112 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYO02278.1
1 1113
Domain Start End Length (AA) Confidence
N-terminal 1 520 520 0,7956
Central domain 521 957 438 0,0573
C-terminal 958 1113 155 0,9164
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-520
Central
521-957
C-terminal
958-1113

Taxonomy

  Name Taxonomy ID Lineage
Phage Pasteurella phage Pmp12
[NCBI] 		3127675 Viruses >
Host Pasteurella multocida
[NCBI] 		747 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pasteurellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYO02278.1 [NCBI]
Genbank nucleotide accession
OR544129.1 [NCBI]
CDS location
range 12682 -> 16023
strand +
CDS
ATGGGTGGAAGAAAAAAAGGGGGAGGTCATACCCCGTACGAAGCACCGGAAAGTGGACAATCCAAACAATTCGTTTCTATTGTTGAGGTCGTATCCGAGGGGCAGATTAAAGGGTTAGTTGACGGCGTTAAATCTGTTTATTTAGACAATACACCGCTACAAGCTAGCGACGACAGTTTTAATTTTAAAAACGTTGAAGCGCAAGGGTGTATTGGCACGCAAGATCAAGATGTGTTGGAAGGGTTTAACACTTCTGAAAAAGAGATTGCGGTCAGTACACAAGTAAAAAAGCTTACACCGATTACACGCACGATCACGGATAGAAAAGTCAGCCGTTTACGGCTAACACTCGGAGTTCAGTCGCTTTTTCATCAAAACGACAAAGGTGATGTTTACGGATCAAAAGTTGATTTTACAGTAACAATCGGTGAAAGAAGTCATCTCGTTTCGATAAATGGAAAGTACAGCTCTCAATACTTAAAACAAGTTGAATTTGGCGACCTGCCGCCCGTTCCATTTCAAGTTAAAGTTGAACGCATGAATGCGGACAGTAAATCCCAGCGTTTGCAGAATAACACGATCTGGGCGAGCTACACTGAAATCATCGAAACGCAATTTGCGTATCCGAACACCGCAATTCTAGGCATTCGTTTTGATTCGGAATATTTCAGTTCAATCCCAAACCGAACATATGAAATTTACGGCATCGAAATGAAAGTGCCGAGCAATTACGATCCATTTGAGCGCACCTATACGGGGTTTTGGGACGGTACATTTAAGATCGCATGGACTAATAACCCAGCTTGGATTTTATACGACTTGATGACAAATAAACGCTATGGTCTTGGCTGGCGTTTAGGTGAATTCAACGTTGATAAGTGGGCGTTATATCAAGCAGCACAATACTGCGATCAAATGGTGCCGGATGGTTTTGGTGGACAAGAGCCAAGATTTACTTGCAATGCATGGTTAACAGATCAGCGCAAAGCATACGATGTGATTAATGACATCTGTTCAATCTTCCGCGCGATGCCGGTGTGGAATGGTCGTGAGTTCACTGTCGTGATGGATAGACCGGCAGATCCGGTGTGGACCTACACAAACGCTAACGTAATCGGTGGGGAGTTCTCTTATCAATATTCCGCACAGAAAGCGCGACACAACGAGATTCATGTTGAATATGTTGACGCAAGTGATAGTTATGAAAGAAAGATCGAGGTTGTTTCTGATGATGATTTAATTCGTCGTCACGGCTTAAACGTTAAAAAAGTGACAGCATTTGCTTGCACGTCACGCGGACAAGCGTTTAGAACAGGGAAATGGATACTTGAAACAGAGCGGTTAGAAACAAAAACAGTAACGTTTGCTGTTGGTGCCGAGGGGCTGATGCACATCCCGGGCGATATTATTCGCGTTGCAGATTGTGATTATGCGGACACAAACATCGGTGGTCGCGTTCTCGCTGTAAACGGTCGAAATGTCACGCTTGATAAAGAAATTTCGCTGTGGAGCAATAGCTATTTAACTTACATTGATGGTGAAGCGAAGCATAAAGATATTCGTATCGTCAGTAAAAACGGCAAAGAGGTTACGCTTGAATCTGAGCCGGTAGGACTAGCTGAACTTGGTGTTTGGTCTTTGACTACGCAAGAAATCAACGTGCAGTTATTTAGAGCGTTGACGATCAACGAAGAAAAACAAGGTCAATACACAATTGTCGCACTTCAACATGAGCCACAAAAAGAGGCAATTGTTGATAATGGTGCTGTGTTCGAGCCACGTGAAACCACGCTTTCTACTGCCGGACTTGATAAAGTCAGTCACGTCAACGTACAAGCCAACGGTGACGGTGTTGCACTAAGTTTTGACTATGTCGTCAAGCACAGCGCAATGATTAAATATCAGATTAAATTATATAAAAACGGAACGTTTTATAAAGTTTATGATGATTTAACAACACCAAACCACAAGTTTGTGGGCTTACCGGACGGTGAATACGTCGCAGAAATTCGTGCGAAGAACGAGCAAGGACAGCTATCAGAAGCGGTTACTAAGTCATTTAATATCAGCTTTACCGTGACGGAATTAACGACCGTTTCGAAAGTGCTTGGGATTTTGTTGCAATGGAAAAATCCAGTCTTCGCTAATCCTAACTCTGCGATCGAAATCTGGACGAATACAGAAGATCGCTTTGAAACAGCAAGAAAACTCGTCACATTGGCTTATCCGACAAACAGTTATTCGTTTGACGGACTGGGCGTGAATGAAACGCACTATTTCTGGGCTCGCATGCTCGATACGGCAAATGGAAATGCGGGAGAGTTAACAACATCCGTTGTCGGTGTAACGGAAAGCTCGGGTGAAAAACTCGTCGATTACTTGCAAGGACAAATAAGCAGAAACGCTTTTTCTCAAGCGTTAGCGGAAGAAATTACGCAAATTGAAAGAACAGGCAAGCGTAATGAAAGCAGCATGCGCAAGATGCAAGTTTTTAAAACGGAAACGCATGCTAGTAGTGGTAGGAAACTTGTTGCTGGTATTGGGATTGGCGTGGATGGCGAAACAGAAGAGTCGCAAGTCATTATCTCAGCAGAGAAATTCGTCATAGCAGATCCAAACAGTAATACGCTTAAAACGCCGTTTACTGTATCAACAGAAAATGGACAAGCTAGAATTGCAATTGCAGGAGATTTAATTGTTAAAAACTCGATCACTGGAGATAAAATTCAGGCAAATACGACGATAACCTCGCCAAAAATTGAAGGTGGCCACATTAAAGGTAACACGTTTGAGGGGGGAGTGATTCGCGGTGCAAGAATTGAGGGTTTGACGGGTAAATTCACGGGTGAGCTTGAAGTAACGCAGATTGTTGGTGGAAATGTTCTAGAAGTATTTACTTGCACATCTACATTTATTGGAATGTCTGGTACAACTTATTACGGAGATAATCCCCGTTATCACATTCGCTATATGCGAAAAATTGTGAAAGTTTTAATCAACAGTGCAAATGTAGATAGAGAGCTATTTATTATAGATCCGCTTTCTTCAATCTCTGGTAGAACTTATACATCAACTTTTCGTCGGAGTAGCGGTAAAAGTGATGGTGATTATTATGCTTCAGAAACAAGATTCATGCCCGGAATCATAAACCTTCAAGCGCGGATCACGTTGCCGAATGGTGTCATCAACGAATATAAAAGATCAATCTCAATTCCAAGAAATGAAACTTGCGCGATTGATATTTCGTATGAAACATTGTCGGACACGTCTGTTAATGAAGATACATTCACATTCATTGCTGTTGTGAAATCAACGTCATCAAAAACGATCTCTAAAGTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
479adb670691a1d17b36870dfb6d059cb6e740c5f5fd3865ff4f5051605fb0dd
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8029
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pathogenomic analysis and characterization of Pasteurella multocida strains recovered from human infections Smallman,T.R., Perlaza-Jimenez,L., Wang,X., Korman,T.M., Kotsanas,D., Gibson,J.S., Turni,C., Harper,M. and Boyce,J.D. 2024 38426766 GenBank