Protein

View in Explore
Genbank accession
YP_009800967.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MASANVLRTIFTYPISGLGPYTIAFDYLARKFVQVTLLGPDRKLLVLGTDYRFIATKQIQLINAAPAGYGQIEIRRYTDAQDRLVDFQDGSILRATDLNVSQVQTMHIAEEGRDVAGNTLGVDSDGNLDARLRKMVNLLDGVLDGDAVTIRQMKTWSESALNQAGIAKQQADAASASASAAKTSETNSATTAGNSANSATLAQKWAANPQGVLVDASKYSAYHYALASEQSATSAQGSAQSSNQDAQATAADRVQTGLDRVASDASATKAEQEAAKLGNMNDLADSIHKVGTDSLVTFKRGVSGQVISINDATNKDLSLWSFSPMTVAGLEGALGIGPNYNNVPIGNRKIVIDANVWCNDLSTGTLRLRDKASDFTKEFNFSFGSGSVIQVNRTQNIGTLNWSNLNFTNINALDITNNFSAKGGVSAYAATGSLINQGGPTLASSIRDGGTPGGRVRANFDMWVRGAETGQRQGVVRVHGDDMSGEQNWIFIGDGGSAGRISGSAGSVLTDRYPTSDARLKTIDGDSDLEESGKRLDALEFKDYHWNNHEYNKQVGLSTDVQEHGVIAQQAMQVDPRYVEVNEQIIGTIYEGRSFDKHVLNWMPMLLDTMAAVKQLRARVKELEAQVNKEE
Physico‐chemical
properties
protein length:631 AA
molecular weight: 67814,51910 Da
isoelectric point:5,32021
aromaticity:0,06656
hydropathy:-0,34739

Domains

Domains [InterPro]
DC_0657
STR
1–623
DC_0657
IPR005604
ATT
20–130
IPR005604 IPR030392
IPR030392
CHP
516–579
IPR030392 Coil
YP_009800967.1
1 631
Architecture
STR
ATT
STR
STR 1-19 | ATT 20-130 | STR 131-627 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage Dagda
[NCBI] 		2163630 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Aarhusvirus
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009800967.1 [NCBI]
Genbank nucleotide accession
NC_047961.1 [NCBI]
CDS location
range 33676 -> 35571
strand +
CDS
ATGGCAAGTGCTAACGTGCTGCGAACAATCTTCACGTACCCTATTAGCGGCCTTGGGCCATATACCATCGCGTTTGACTATCTGGCCCGTAAGTTTGTCCAAGTGACTCTCTTAGGTCCTGACCGTAAGCTTCTGGTGTTGGGTACTGATTATCGCTTTATTGCAACCAAACAGATTCAGCTCATCAATGCTGCTCCTGCTGGTTATGGTCAGATTGAGATTCGTCGTTATACAGATGCTCAGGACCGATTGGTTGATTTCCAAGATGGCTCAATCCTTCGAGCTACAGACCTTAACGTTTCTCAGGTTCAGACAATGCATATTGCTGAAGAGGGACGTGATGTGGCCGGTAATACCCTTGGCGTTGACTCTGATGGTAACCTTGATGCTCGTCTCCGTAAGATGGTGAACCTGCTTGATGGTGTACTTGATGGCGACGCTGTGACTATCCGTCAGATGAAGACTTGGAGTGAGTCCGCTTTGAATCAGGCCGGTATCGCTAAGCAACAGGCTGATGCTGCAAGTGCTTCTGCAAGTGCCGCTAAGACCTCAGAGACTAACTCTGCAACTACTGCTGGTAACTCTGCGAACTCTGCAACACTGGCTCAGAAGTGGGCAGCGAACCCTCAGGGTGTTCTTGTGGATGCCTCTAAGTACTCAGCATATCACTATGCTCTGGCCTCTGAGCAGTCTGCTACGAGTGCTCAAGGCTCAGCTCAAAGCTCCAATCAGGATGCTCAGGCTACTGCTGCTGATAGAGTTCAAACAGGTCTTGACCGTGTAGCTTCTGATGCTTCAGCCACTAAGGCAGAGCAGGAGGCCGCTAAGCTCGGCAATATGAATGACCTCGCGGATTCAATCCATAAGGTTGGCACCGACAGCCTCGTTACGTTCAAGCGTGGTGTAAGCGGTCAGGTAATTTCTATCAATGATGCTACCAATAAAGACCTTTCACTGTGGTCATTTAGTCCAATGACTGTAGCAGGTCTTGAGGGGGCATTAGGCATTGGTCCTAACTATAACAATGTCCCTATTGGAAATCGCAAGATTGTGATTGATGCAAACGTATGGTGTAATGATTTATCTACTGGAACGCTTAGATTGCGTGATAAGGCATCTGACTTCACTAAAGAGTTCAACTTCTCATTTGGTTCAGGTAGTGTTATTCAAGTAAATAGAACTCAGAACATTGGTACGTTAAACTGGAGTAATCTTAACTTCACCAATATCAACGCTCTTGATATCACCAACAACTTCTCTGCAAAAGGTGGTGTTAGTGCATATGCCGCTACTGGCTCTCTTATCAACCAAGGAGGTCCGACACTCGCGTCCTCAATTAGAGATGGGGGAACTCCCGGTGGTCGCGTTCGCGCTAACTTTGATATGTGGGTGCGTGGTGCAGAGACTGGGCAGCGACAAGGTGTTGTAAGGGTCCATGGTGATGATATGTCTGGTGAGCAAAACTGGATTTTCATTGGTGATGGTGGTAGTGCTGGTCGAATCTCTGGCTCTGCTGGTTCCGTTCTCACCGATAGATACCCAACGTCTGACGCCAGATTGAAGACCATTGATGGCGACTCAGACCTTGAGGAATCTGGTAAGCGTCTTGATGCTCTGGAGTTTAAGGACTATCACTGGAACAATCATGAGTATAACAAGCAGGTTGGACTGAGTACTGACGTTCAGGAGCATGGTGTTATTGCTCAGCAGGCTATGCAGGTTGACCCTCGTTATGTTGAGGTTAATGAGCAAATCATTGGTACTATCTATGAGGGGCGCTCTTTTGATAAGCACGTTCTGAATTGGATGCCTATGCTGCTGGATACTATGGCTGCTGTTAAACAGCTTCGTGCTCGTGTTAAAGAGCTGGAGGCACAAGTAAATAAGGAGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
627a78673ffda2771fb176aa1463cc661ee3c285b4ef0c8978e50daf21161928
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6472
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Carstens,A.B., Djurhuus,A.M. and Hansen,L.H. 2021 — GenBank