Protein

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Genbank accession
UYE97279.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MASKVSVGKTAPVPLGQQPAANSLPVVFAEDQQPIPVEEQNKIQSEVALSLLGIPRSEVALGIFADVNTYDINPTEWAQDPIENVPSGVGKGISHGVEHIPDEAGARLVASDGKTTILTSKRFFRYQPGRVSASTMGVKMNVTEDPDTSSATGFTQAEKNAMKGAPSIKKWGIFDKFDGYYFEIANAGLGNDFRCVRRTQAIIKSEQIGYTGPLSWLKNGGAETGDALPQPNSNFGEAGVDPVIMRDGLIYVAAAINDPSLVYSPDDVRNIDGTKDADGYYPGAGERLKNYSFNSNYAVRLATYNGSTWTEHMADRKFMFPFDQSKTIPLEPKGDTLKNGYIRSDCHCNFYETISNFNRKGNWSGELTTFNDFTVPANHSNWGTSSTPPSQYSNIDTWYTGNNTDAAANPERKIWHLLVNVQGSDKITPQQFQHANNCLPSSPDVKQRSGAATNGNVTLKEWFNLCVPAPYRMVYEWRPVRAMFSGDKLDGGESVVRWSDINTAANDTTAGNAGEGAINRPGDVVKTADNEDLKTVSAYEIDFTKVTMWKTEFSWYGAVGAVFLCYVPVANGEARWVRVHHIRASNQHSVASLGNATLPITYLTHNSGLGEQPAIGNTLTKYGASYYIDGGDKGTVRLLSKASDFNREVAPGFLQFPGGGNIATGGYEIINNNVVEINVNSYTGNTADRRGLLRRDTVVGLMGAYLDGDVTNKVKWVGKGSVDGNARLYFTNQVGSGTSSTPGNAIKIIIPRAQKSLLSFRAKDFILNRKGDEVRNRLQIYPLKLGAGIAAGSTGDLMTLRTIKNPLKIISNVDIGSNNNTIYGQGTFAQTPGRAKDPANANTFVNTKTSTLAVEVDFTGAKSILQIFFLL
Physico‐chemical
properties
protein length:871 AA
molecular weight: 94519,60720 Da
isoelectric point:6,85407
aromaticity:0,09300
hydropathy:-0,37933

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYE97279.1
1 871
Domain Start End Length (AA) Confidence
N-terminal 1 72 72 0,9811
Central domain 73 289 218 0,3919
C-terminal 290 871 581 0,8428
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-72
Central
73-289
C-terminal
290-871

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-TIM54
[NCBI] 		1137744 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. WH 8102
[NCBI] 		84588 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYE97279.1 [NCBI]
Genbank nucleotide accession
OP053362 [NCBI]
CDS location
range 91217 -> 93832
strand +
CDS
ATGGCTTCAAAAGTATCCGTAGGAAAAACTGCCCCAGTGCCCTTGGGGCAACAACCAGCGGCTAACTCGCTGCCGGTTGTTTTTGCAGAAGATCAACAGCCGATACCTGTTGAAGAACAGAATAAAATTCAATCAGAAGTTGCTCTATCGCTCCTTGGCATCCCTAGATCTGAAGTTGCCTTAGGTATCTTTGCAGACGTTAACACATATGACATCAACCCTACAGAGTGGGCTCAAGATCCGATAGAAAATGTACCGTCAGGTGTAGGTAAAGGAATTAGTCACGGAGTTGAACACATCCCAGATGAAGCAGGAGCAAGATTAGTCGCTTCTGATGGAAAGACAACAATCCTAACCTCTAAGAGATTCTTCCGTTACCAACCTGGTCGTGTGTCAGCTTCCACAATGGGTGTGAAGATGAATGTAACTGAGGACCCAGATACTTCTTCAGCAACAGGATTTACCCAGGCAGAAAAGAACGCGATGAAAGGCGCCCCAAGCATTAAGAAGTGGGGTATCTTTGATAAGTTTGACGGATATTATTTTGAGATTGCAAACGCCGGGTTGGGCAACGATTTCCGTTGCGTAAGAAGAACTCAGGCTATTATTAAGTCTGAGCAAATAGGTTATACTGGTCCTCTCTCCTGGCTTAAAAATGGGGGCGCGGAAACGGGTGATGCTTTACCACAACCTAATAGTAATTTTGGTGAAGCAGGCGTAGATCCTGTAATCATGCGCGATGGCCTTATCTATGTGGCCGCTGCGATAAATGATCCTAGCCTTGTGTATAGTCCTGATGATGTAAGAAATATTGATGGCACAAAAGATGCTGATGGATATTATCCTGGAGCTGGAGAAAGGCTAAAGAACTATAGCTTTAATTCTAACTACGCTGTTAGATTAGCGACATACAATGGCTCGACTTGGACCGAGCATATGGCAGATAGGAAGTTTATGTTCCCATTTGACCAATCAAAAACCATACCCCTTGAGCCCAAAGGAGATACTCTTAAAAACGGATATATTAGATCTGATTGTCATTGTAACTTCTATGAGACCATCTCTAATTTCAATAGAAAGGGCAACTGGAGTGGTGAGCTCACTACCTTTAATGATTTTACTGTTCCAGCAAACCATTCAAACTGGGGTACCAGCTCAACTCCACCTTCACAATACTCAAACATTGACACCTGGTACACAGGAAATAACACAGATGCAGCTGCAAATCCAGAAAGAAAGATCTGGCACCTTCTAGTTAATGTCCAAGGAAGTGATAAAATTACTCCGCAGCAGTTCCAACATGCTAATAATTGTTTGCCTTCATCTCCTGACGTAAAACAAAGAAGCGGCGCAGCTACCAACGGAAACGTAACTCTGAAAGAATGGTTTAACCTTTGTGTTCCCGCTCCATACCGCATGGTATATGAGTGGAGACCTGTTAGAGCAATGTTCTCTGGCGATAAGCTTGACGGCGGAGAAAGCGTAGTTCGCTGGAGTGATATCAACACCGCAGCAAACGATACCACTGCTGGTAATGCCGGTGAAGGCGCAATTAACCGTCCGGGTGATGTTGTAAAGACTGCAGACAATGAAGACCTTAAGACAGTTTCTGCGTACGAAATCGACTTCACAAAAGTAACCATGTGGAAGACAGAGTTCTCCTGGTATGGTGCTGTTGGTGCTGTGTTCCTTTGTTACGTACCTGTAGCCAATGGCGAAGCAAGATGGGTAAGAGTACACCACATCAGAGCTTCGAACCAGCACTCTGTGGCTTCTCTTGGTAATGCTACGTTGCCTATTACGTACTTAACACATAACTCCGGTTTAGGAGAACAACCAGCTATTGGTAACACCCTGACTAAGTACGGTGCTTCTTACTATATTGATGGTGGTGATAAGGGCACTGTTAGATTGCTATCTAAAGCATCCGATTTCAACAGAGAGGTTGCTCCTGGATTCCTTCAATTCCCCGGTGGTGGTAATATAGCTACAGGCGGATACGAGATTATAAACAATAACGTTGTAGAAATTAACGTTAACTCTTATACTGGAAACACGGCCGATCGTAGAGGGTTATTAAGAAGAGATACCGTAGTTGGATTAATGGGAGCCTATCTAGATGGAGATGTTACAAATAAGGTTAAATGGGTAGGTAAGGGTAGCGTTGATGGAAATGCAAGACTCTACTTTACAAATCAAGTTGGAAGTGGAACAAGCTCAACTCCGGGTAATGCTATTAAGATTATCATCCCTAGAGCTCAGAAGTCTCTGTTGTCCTTTAGAGCAAAAGACTTTATCCTAAATAGAAAAGGAGATGAGGTCCGTAATAGACTTCAGATCTATCCTCTTAAGCTAGGAGCAGGTATTGCCGCTGGATCTACTGGAGACTTGATGACCTTAAGAACAATCAAGAACCCACTAAAAATTATTTCTAATGTAGATATCGGAAGTAATAATAACACGATCTATGGTCAAGGAACGTTTGCTCAAACTCCTGGCAGAGCAAAAGATCCCGCAAATGCTAATACTTTTGTAAATACAAAAACATCTACTCTAGCAGTAGAAGTAGATTTTACAGGGGCCAAGTCGATCCTACAGATATTCTTCCTGCTGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
2f4692fd1d60bf7ac0072f1cd2f967485a5bc9b25661d7a67351acf38d04888a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2838
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Widespread yet persistent low abundance of TIM5-like cyanophages in the oceans Baran,N., Carlson,M.C.G., Sabehi,G., Peleg,M., Kondratyeva,K., Pekarski,I. and Lindell,D. — — GenBank