Protein

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Genbank accession
XJP07735.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MPLICGQSTTADLLDEVNANTQNLTLKVFQSPTGGLLTKINTRTDGGGVVYEVRTTPGGTLGTIYGDADGTGTIPQDGTSNKSDADGTVEFYIDDGYFYITAAGERQNLTVSRYGFDSIKQLDAAADGITDDSQEVAIAVERSAPLGVANVESETPNTYGAELSADVLMQNNTSGRLYNPQATLIGHMFGQETLQHWFNIFKGASNKNGGNTAVAKIICTGDSTTFGVGGSYGGVPAILADMAKAKGYPNVEVVNRGRSGMPTINWPGKTSSWENNYLNSDMAEDPDLYIIRWGANDPFYNITPIGDSNGTMTETRDAVLDLVIAGYRRILTKLRNTAGMDVDNLSVIIATPGPMNDVFFGRDEVYFQRLSLALKQMALDFQCAFVDIYAMFSNSWGGVGKWMDSDGTSGVQRAVHPHDALYEHIAGAIGALALPDYGLDWKVNAVRNTSSTTVDRQGSDNSNQYFAGINIDRMGEGLGSTLGRPYNGAALTVKQADGAVGQFNFPLKGFGAGMSARFGFGTFNGYWNGAVYKVVDTGYVNGWGDLGGDFEVGSYKLSLSGTVELSGVLAVGTTTDDTAIFTLPAGFRPSKTVIALAATEMGDCLISVSVSGAVSISRFSSGGNYVTMNGVRFPVY
Physico‐chemical
properties
protein length:636 AA
molecular weight: 67549,43480 Da
isoelectric point:4,60944
aromaticity:0,09748
hydropathy:-0,14387

Domains

Domains [InterPro]
IPR051532
Unmapped
118–437
IPR051532
IPR036514
STR
210–430
IPR036514 DC_2246
IPR036514
STR
215–433
IPR036514
SSF52266
STR
216–429
SSF52266
cd00229
ENZ
217–432
cd00229
IPR013830
ENZ
219–423
IPR013830
XJP07735.1
1 636
Architecture
STR
RBD
STR 210-433 | RBD 434-635 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XJP07735.1
1 636
Domain Start End Length (AA) Confidence
N-terminal 1 133 133 0,9822
Central domain 134 357 225 0,7457
C-terminal 358 636 278 0,7951
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-133
Central
134-357
C-terminal
358-636

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage vB_Psp_PY6
[NCBI] 		3374930 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas sp.
[NCBI] 		53249 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XJP07735.1 [NCBI]
Genbank nucleotide accession
PP806536.1 [NCBI]
CDS location
range 20853 -> 22763
strand -
CDS
ATGCCTCTAATATGCGGGCAGAGCACTACGGCCGACCTACTGGACGAAGTGAACGCAAACACACAAAATCTGACCCTGAAAGTGTTCCAGTCCCCCACGGGTGGGCTACTCACTAAAATAAATACTCGGACCGACGGCGGCGGCGTAGTGTACGAAGTGCGAACCACCCCCGGCGGAACCCTCGGCACGATCTACGGAGACGCAGACGGCACCGGCACGATCCCGCAGGACGGCACTAGCAACAAGTCCGACGCAGACGGCACGGTCGAGTTCTACATAGACGACGGGTACTTCTACATAACTGCGGCAGGAGAACGCCAAAACCTGACAGTCAGCCGATACGGTTTTGATTCAATAAAGCAGCTAGACGCGGCGGCGGATGGCATCACGGACGACTCGCAGGAAGTGGCGATCGCCGTCGAACGGTCTGCGCCCCTCGGTGTGGCTAACGTAGAGAGTGAAACGCCGAACACGTACGGCGCAGAACTGTCCGCCGACGTTTTGATGCAAAACAATACGTCAGGGCGACTTTATAACCCACAGGCGACACTCATCGGCCACATGTTCGGGCAAGAGACCCTACAGCACTGGTTCAACATTTTCAAAGGGGCGAGCAACAAGAATGGGGGTAACACCGCAGTTGCTAAAATAATATGCACGGGAGACAGCACGACTTTTGGAGTGGGTGGGTCGTACGGAGGCGTTCCGGCTATACTCGCCGACATGGCGAAGGCGAAAGGGTACCCGAACGTCGAGGTAGTGAACAGGGGCCGCTCGGGGATGCCAACGATCAATTGGCCCGGTAAGACCTCGTCATGGGAGAACAACTACTTAAATAGTGACATGGCCGAGGACCCCGACCTGTACATAATACGATGGGGGGCCAATGACCCTTTTTACAACATAACGCCAATAGGGGACAGCAACGGGACAATGACGGAGACACGCGACGCAGTGCTGGACTTAGTCATTGCAGGTTACCGCCGCATCCTCACAAAACTTCGAAACACGGCAGGCATGGACGTCGACAACCTGTCGGTGATAATCGCGACGCCCGGCCCTATGAATGACGTGTTTTTCGGCCGAGACGAGGTGTATTTTCAGCGATTGTCTCTTGCACTTAAACAAATGGCCCTCGACTTCCAGTGTGCGTTCGTTGACATATACGCGATGTTTAGCAACTCATGGGGTGGCGTTGGCAAGTGGATGGATAGCGACGGGACGAGCGGTGTCCAGCGGGCGGTCCACCCTCACGATGCGCTATATGAACACATCGCCGGTGCGATCGGTGCGCTGGCCCTGCCTGACTATGGGCTAGACTGGAAAGTGAACGCGGTCAGGAACACAAGTAGCACCACGGTAGACAGACAAGGGTCGGACAACTCTAACCAATACTTCGCGGGCATAAACATCGACCGTATGGGGGAGGGGCTGGGGTCCACGCTGGGCCGCCCTTATAACGGCGCCGCGCTGACAGTTAAGCAGGCCGACGGCGCCGTGGGCCAGTTTAACTTCCCGTTGAAGGGGTTCGGCGCGGGCATGAGCGCGCGGTTTGGGTTCGGGACGTTTAACGGGTATTGGAACGGGGCTGTTTATAAAGTAGTAGATACGGGTTACGTCAACGGGTGGGGCGACCTGGGCGGGGACTTTGAAGTGGGGTCATATAAGCTAAGCTTGTCAGGCACGGTCGAGTTATCCGGCGTGCTCGCGGTAGGGACTACAACAGATGACACCGCTATTTTTACCCTCCCCGCAGGTTTCCGCCCATCTAAAACAGTGATCGCGCTGGCGGCCACCGAAATGGGCGATTGTTTGATCTCGGTGAGCGTGTCGGGCGCCGTGTCGATCAGTCGTTTCTCTTCGGGAGGGAATTACGTCACCATGAACGGGGTGCGCTTCCCGGTATACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
01fa65925d54bd18f978ba9782c76bcf86d4de9f614b89fa6922ecf7d0833c25
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6638
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of bacteriophages from antarctic seawater Rojas,N., Araneda,D., Bastias,R., Olivares,J., Plaza,N., Katharios,P., Garcia,K., Alcaman,M.E. and Higuera,G. 2009-01 — GenBank