Protein

View in Explore
Genbank accession
XJP07735.1 [GenBank]
Protein name
SGNH/GDSL hydrolase family protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence Phold
Probability 1,00
Protein sequence
MPLICGQSTTADLLDEVNANTQNLTLKVFQSPTGGLLTKINTRTDGGGVVYEVRTTPGGTLGTIYGDADGTGTIPQDGTSNKSDADGTVEFYIDDGYFYITAAGERQNLTVSRYGFDSIKQLDAAADGITDDSQEVAIAVERSAPLGVANVESETPNTYGAELSADVLMQNNTSGRLYNPQATLIGHMFGQETLQHWFNIFKGASNKNGGNTAVAKIICTGDSTTFGVGGSYGGVPAILADMAKAKGYPNVEVVNRGRSGMPTINWPGKTSSWENNYLNSDMAEDPDLYIIRWGANDPFYNITPIGDSNGTMTETRDAVLDLVIAGYRRILTKLRNTAGMDVDNLSVIIATPGPMNDVFFGRDEVYFQRLSLALKQMALDFQCAFVDIYAMFSNSWGGVGKWMDSDGTSGVQRAVHPHDALYEHIAGAIGALALPDYGLDWKVNAVRNTSSTTVDRQGSDNSNQYFAGINIDRMGEGLGSTLGRPYNGAALTVKQADGAVGQFNFPLKGFGAGMSARFGFGTFNGYWNGAVYKVVDTGYVNGWGDLGGDFEVGSYKLSLSGTVELSGVLAVGTTTDDTAIFTLPAGFRPSKTVIALAATEMGDCLISVSVSGAVSISRFSSGGNYVTMNGVRFPVY
Physico‐chemical
properties
protein length:636 AA
molecular weight: 67549,43480 Da
isoelectric point:4,60944
aromaticity:0,09748
hydropathy:-0,14387

Domains

Domains [InterPro]
IPR051532
118–437
IPR051532
IPR036514
215–433
IPR036514
SSF52266
216–429
SSF52266
cd00229
217–432
cd00229
IPR013830
219–423
IPR013830
XJP07735.1
1 636
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage vB_Psp_PY6
[NCBI] 		3374930 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XJP07735.1 [NCBI]
Genbank nucleotide accession
PP806536 [NCBI]
CDS location
range 20853 -> 22763
strand -
CDS
ATGCCTCTAATATGCGGGCAGAGCACTACGGCCGACCTACTGGACGAAGTGAACGCAAACACACAAAATCTGACCCTGAAAGTGTTCCAGTCCCCCACGGGTGGGCTACTCACTAAAATAAATACTCGGACCGACGGCGGCGGCGTAGTGTACGAAGTGCGAACCACCCCCGGCGGAACCCTCGGCACGATCTACGGAGACGCAGACGGCACCGGCACGATCCCGCAGGACGGCACTAGCAACAAGTCCGACGCAGACGGCACGGTCGAGTTCTACATAGACGACGGGTACTTCTACATAACTGCGGCAGGAGAACGCCAAAACCTGACAGTCAGCCGATACGGTTTTGATTCAATAAAGCAGCTAGACGCGGCGGCGGATGGCATCACGGACGACTCGCAGGAAGTGGCGATCGCCGTCGAACGGTCTGCGCCCCTCGGTGTGGCTAACGTAGAGAGTGAAACGCCGAACACGTACGGCGCAGAACTGTCCGCCGACGTTTTGATGCAAAACAATACGTCAGGGCGACTTTATAACCCACAGGCGACACTCATCGGCCACATGTTCGGGCAAGAGACCCTACAGCACTGGTTCAACATTTTCAAAGGGGCGAGCAACAAGAATGGGGGTAACACCGCAGTTGCTAAAATAATATGCACGGGAGACAGCACGACTTTTGGAGTGGGTGGGTCGTACGGAGGCGTTCCGGCTATACTCGCCGACATGGCGAAGGCGAAAGGGTACCCGAACGTCGAGGTAGTGAACAGGGGCCGCTCGGGGATGCCAACGATCAATTGGCCCGGTAAGACCTCGTCATGGGAGAACAACTACTTAAATAGTGACATGGCCGAGGACCCCGACCTGTACATAATACGATGGGGGGCCAATGACCCTTTTTACAACATAACGCCAATAGGGGACAGCAACGGGACAATGACGGAGACACGCGACGCAGTGCTGGACTTAGTCATTGCAGGTTACCGCCGCATCCTCACAAAACTTCGAAACACGGCAGGCATGGACGTCGACAACCTGTCGGTGATAATCGCGACGCCCGGCCCTATGAATGACGTGTTTTTCGGCCGAGACGAGGTGTATTTTCAGCGATTGTCTCTTGCACTTAAACAAATGGCCCTCGACTTCCAGTGTGCGTTCGTTGACATATACGCGATGTTTAGCAACTCATGGGGTGGCGTTGGCAAGTGGATGGATAGCGACGGGACGAGCGGTGTCCAGCGGGCGGTCCACCCTCACGATGCGCTATATGAACACATCGCCGGTGCGATCGGTGCGCTGGCCCTGCCTGACTATGGGCTAGACTGGAAAGTGAACGCGGTCAGGAACACAAGTAGCACCACGGTAGACAGACAAGGGTCGGACAACTCTAACCAATACTTCGCGGGCATAAACATCGACCGTATGGGGGAGGGGCTGGGGTCCACGCTGGGCCGCCCTTATAACGGCGCCGCGCTGACAGTTAAGCAGGCCGACGGCGCCGTGGGCCAGTTTAACTTCCCGTTGAAGGGGTTCGGCGCGGGCATGAGCGCGCGGTTTGGGTTCGGGACGTTTAACGGGTATTGGAACGGGGCTGTTTATAAAGTAGTAGATACGGGTTACGTCAACGGGTGGGGCGACCTGGGCGGGGACTTTGAAGTGGGGTCATATAAGCTAAGCTTGTCAGGCACGGTCGAGTTATCCGGCGTGCTCGCGGTAGGGACTACAACAGATGACACCGCTATTTTTACCCTCCCCGCAGGTTTCCGCCCATCTAAAACAGTGATCGCGCTGGCGGCCACCGAAATGGGCGATTGTTTGATCTCGGTGAGCGTGTCGGGCGCCGTGTCGATCAGTCGTTTCTCTTCGGGAGGGAATTACGTCACCATGAACGGGGTGCGCTTCCCGGTATACTAA

Tertiary structure

PDB ID
01fa65925d54bd18f978ba9782c76bcf86d4de9f614b89fa6922ecf7d0833c25
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6638
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of bacteriophages from antarctic seawater Rojas,N., Araneda,D., Bastias,R., Olivares,J., Plaza,N., Katharios,P., Garcia,K., Alcaman,M.E. and Higuera,G. 2009-01 — GenBank