Protein

View in Explore
Genbank accession
QLF88419.1 [GenBank]
Protein name
tail tube B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,74
Protein sequence
MGSVVSQSIPNFLNGMSQQTPTQRGINQGEDQINLQNGLVDGLSKRPPLDFVATLDSSNIYSNKTKFWSIQRDADNQFIVALYNGGIKVFDLLGNEKTVTVASGSSYLTSTNPRENFKLVNIADYTFIANTATTVAADSTTSAAKVEEFLIVCKLTNYGREYKVALKHPSMAQELEVIFQLPSGNDASTDAKFRDTNKITDILLYGTSSTHWDSTADGIGFKVVRTDTNASVSTTQGLANYSGFTSYFTFEAFDSVIYGKPTDQNANYTITTSDGSGNTAMYAIRDEIQDFSKLPFYGKEGVIIKITGEEGDTLSDYYVNFSGKSGVWNETIAPATSVGLDNSTMPHALINNNNGTFTFQQLDWTDRVCGDIDTNPNPTFVGKKINNLTFYKNRLGILSGENLVLTENASFFNYFATTSTQVLDTDPIDIAASGTQVNTLKNSVGFNESLLIFSDTAQYKLDSAAETITPTTAILNAVSTFEHDAKVTPVAAGKFAYFAQARTNNTAIREYFADDDTLTNDGLDITVSVQNLIPSNCYQIVSNTTEDTLIFLTSDTADSQTAPYSGTVSTTYANTMYIYKYFFDGGEKVQNAWSKWTFTGVKIIGAMSLESFIYVLASEGTTTKLLKIDLRNLKDTTIGHGVYLDLKTSVTGTYDAATNLTTFTSLYGVKTGLIAVDRTNGSNYTATNTTGSTYTIVGNHTALYIGVPYESKYTMSTQFVRENTGRGLVAVTSGRYQIRNISFNFENSGFFQVEVTPENRDTSTAIMNGYVIGTSTSVIGQPAISTGTLRVPVQAENTQFTLDIKSSSHLPMYIAGAEVEGYYHNRARRI
Physico‐chemical
properties
protein length:830 AA
molecular weight: 90627,50600 Da
isoelectric point:4,86487
aromaticity:0,10723
hydropathy:-0,23458

Domains

Domains [InterPro]
IPR058003
TTP
3–830
IPR058003
QLF88419.1
1 830
Architecture
TTP
TTP 3-830
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QLF88419.1
1 830
Domain Start End Length (AA) Confidence
N-terminal 1 134 134 0,9629
Central domain 135 333 200 0,6586
C-terminal 334 830 496 0,3524
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-134
Central
135-333
C-terminal
334-830

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage Jormungand EXVC012P
[NCBI] 		2736232 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidatus Pelagibacter sp
[NCBI] 		2024849 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QLF88419.1 [NCBI]
Genbank nucleotide accession
MT375528 [NCBI]
CDS location
range 16073 -> 18565
strand +
CDS
ATGGGAAGTGTTGTTTCACAATCTATTCCTAACTTCTTAAATGGTATGTCTCAACAGACACCAACTCAAAGAGGTATTAATCAGGGAGAAGACCAAATAAACTTACAAAATGGTTTAGTAGATGGTCTATCTAAAAGACCTCCTTTAGATTTTGTAGCAACATTAGACAGTAGTAATATTTATTCTAACAAAACAAAATTTTGGTCAATACAAAGAGATGCAGATAATCAGTTTATTGTAGCTTTATATAATGGTGGTATCAAAGTATTTGATTTATTAGGTAATGAAAAAACTGTTACAGTTGCAAGTGGTTCAAGTTATTTAACTTCAACAAACCCTAGAGAAAACTTTAAGTTAGTTAACATTGCTGATTATACATTTATTGCTAACACAGCAACAACAGTTGCGGCTGACAGCACAACGTCTGCGGCTAAAGTAGAAGAGTTTTTAATTGTTTGTAAATTAACAAACTATGGTAGAGAATATAAAGTTGCATTGAAACACCCATCAATGGCACAAGAACTAGAAGTTATTTTTCAGTTACCTTCAGGTAATGATGCTTCTACTGATGCAAAATTTAGAGATACAAACAAAATTACAGATATACTTTTATATGGAACTTCAAGTACACACTGGGATAGTACGGCTGATGGCATTGGATTTAAAGTAGTAAGAACTGACACAAATGCTTCTGTATCAACTACACAAGGATTAGCTAACTATTCTGGTTTTACATCTTATTTTACGTTTGAGGCTTTTGATAGTGTAATTTATGGTAAACCGACAGACCAAAATGCAAACTATACTATAACTACATCTGATGGTTCTGGTAATACAGCCATGTATGCCATTAGAGATGAGATACAAGATTTTAGTAAGTTACCTTTTTATGGAAAAGAAGGTGTAATTATAAAAATTACTGGAGAAGAAGGTGATACATTATCTGATTACTATGTAAATTTTTCAGGTAAATCTGGTGTATGGAATGAAACTATAGCACCTGCAACTTCCGTAGGTTTAGATAATTCTACAATGCCACACGCATTGATTAATAACAACAATGGTACATTTACATTTCAACAATTAGATTGGACAGATAGAGTATGTGGAGATATTGATACTAATCCTAATCCAACTTTTGTTGGTAAAAAAATTAACAATTTAACATTTTACAAAAACAGATTAGGTATATTATCAGGAGAGAATTTAGTATTAACAGAAAATGCTTCTTTCTTTAATTACTTTGCAACAACATCTACACAAGTATTAGATACTGACCCTATTGATATAGCGGCTTCGGGTACACAAGTAAATACACTTAAAAACTCTGTTGGCTTTAATGAAAGTTTGTTAATATTTTCTGATACAGCACAATATAAATTAGATAGTGCGGCAGAAACTATTACACCTACTACAGCTATCCTTAATGCTGTTTCTACTTTCGAACATGATGCAAAAGTTACACCTGTTGCGGCAGGTAAGTTTGCATATTTTGCACAAGCAAGAACTAATAATACAGCCATAAGAGAATATTTTGCTGATGATGATACTCTTACTAATGATGGATTAGATATTACAGTTTCAGTACAAAACTTGATACCTAGTAACTGTTATCAAATTGTAAGTAATACAACAGAAGATACTTTAATATTTTTAACATCTGATACCGCAGATAGTCAAACAGCACCTTATAGTGGCACAGTGTCTACAACATACGCTAACACAATGTACATCTATAAGTATTTCTTTGATGGTGGTGAGAAAGTGCAAAACGCATGGTCTAAATGGACATTTACTGGTGTTAAAATTATAGGTGCTATGTCATTAGAAAGTTTTATTTATGTATTAGCGTCAGAAGGAACTACTACAAAATTATTAAAAATAGATTTAAGAAATTTAAAAGATACAACAATAGGTCATGGAGTTTATCTTGACCTTAAAACTTCAGTTACAGGAACGTATGATGCGGCAACTAATTTAACTACGTTTACTTCACTTTATGGAGTAAAAACTGGATTGATTGCAGTAGATAGAACTAATGGAAGTAACTACACAGCAACAAATACTACAGGCTCAACTTACACAATCGTCGGAAACCACACAGCGTTATACATTGGTGTGCCATACGAAAGTAAATACACAATGTCTACACAGTTTGTTAGAGAGAATACTGGAAGAGGACTAGTAGCAGTAACTTCAGGTAGATACCAAATACGAAACATATCTTTTAATTTTGAAAACAGTGGGTTCTTCCAAGTAGAAGTCACACCAGAAAATAGAGATACGTCTACAGCTATTATGAATGGTTATGTTATTGGTACTTCTACTTCAGTAATAGGACAACCTGCTATTTCTACAGGTACACTAAGAGTACCAGTACAAGCAGAAAACACACAATTTACTTTAGATATTAAATCGTCATCTCACTTGCCTATGTATATCGCAGGTGCAGAGGTTGAAGGTTATTATCACAATAGAGCAAGAAGGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
67f420970705ce219763ba3c8eba098eba4d86664d64b6d5e291c4ffcfc2a8a6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2985
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50