Protein

View in Explore

Genbank accession

NP_116510.1 [GenBank]

Protein name

tail protein

RBP type

Evidence Phold

Probability 1,00

Evidence RBPdetect2

Probability 0,87

Protein sequence

MQLNIHDSTLKRVGFINNNLPDALHYFDDNWHRYLAEGTSTFDFSVNKINSSYALLTLKSYISFTYDGEDYLFNIINIEQDHYSMHLQCENLNLELISEEVGAYGNTKRHSIVWYLKNVAKITDDFVEIGNNPFPLNDEDSSNPILSFDSTDTKLARIISICNSFNAEFQFRTQLKNDGTLQNITIDLYKEEGVGQKRKDVTLYYGKNIAGITSKADRTSTFFNATTVTDSKNKFNWLSVEGKHYNSDGQLEFYKNAGDNTAYAPLSRDMFPSQLKSSSSDRYTRKNLSIEATSANGLWDYAVSQFKLYAYPQMTYEVVVSVNAVTSALGNDKKLNIGDTIIVQDSTFDKSDGGLILSARVSQQEISFTNPLNNKITFTNFVKLKSEISADLYGRMKDLVDQNTPYKAEVETTNGLQFKNGKGSTTLTARIYFGSDSTETKADSYEWRKDGTLVANVQEITVDASGVVDKAVYSFKATVGGKVVASQSVTITNVNDGADGKTPYFHTAWSYSADGTDRFTTTYPNLNLLEGSKDFSGGWWLVERSENDGIYKGLTVKKSEGPGITKQFIAPKEGIYTFSAYVKSSGNNANIIRAVTLNNVTGKIVPDKSMGINFGWLRDSFQVTLKAGDKIYAQYNVAGSGVLWNAGHKWEEGSAATDDLTSNYPNLNLLEGSKKYTKDNPRIQSSSANDGWTTVDDVFVKNLKAGTYTMSGKADAPWTNHDTSGANKGKVGLWLVSTTPGLGVNISLGETVPKTIEVPKDGDYCVRVNTYSNGKDIEAHKFWDFKLEPGSIATPWMPSKNELQEQLTPWMPSLSEVTTADYPSYIGQYTDFIQYDSAKPSDYTWSLIRGNDGKDGATGKDGVAGKDGVGIKTTVITYALSSSGTDKPNTGWTSQVPTLVKGQYLWTKTVWTYTDSSSETGYSVTYIAKDGNNGNDGIAGKDGVGIKKTTITYAVGTSGTTAPASGWNSQVPNVPAGQFLWTKTVWTYTDNTSETGYSVAMMGVKGDKGDPGNNGTNGIAGKDGKGIKATAITYQASPNGTTAPTGTWSASVPPVAKGSFLWTRTIWTYTDNTTETGYAVAYMGTNGNNGHDGFPGKDGTGIKTTTITYAGSTSGTTPPNNGWTSTVPTVAEGNYLWTKTVWTYTDNTSETGYSVAMMGVKGDKGDPGNNGTNGIAGKDGKGIKATAITYQASPNGTTAPTGTWSASVPPVAKGSFLWTRTIWTYTDNTTETGYAVAYMGTNGNNGHDGFPGKDGTGIKTTTITYAGSTSGTTPPNNGWTSTVPTVAEGNYLWTKTVWTYTDNTSETGYSVAMMGVKGDKGDPGNNGTNGIAGKDGKGIKATAITYQASPNGTTAPTGTWSASVPPVAKGSFLWTRTIWTYTDNTTETGYAVAYMGTNGNNGHDGFPGKDGTGIKTTTITYAGSTSGTTPPNNGWTSTVPTVAEGNYLWTKTVWTYTDNTSETGYSVAMMGVKGDKGDPGNNGTNGIAGKDGKGIKATAITYQASPNGTTAPTGTWSASVPPVAKGSFLWTRTIWTYTDNTTETGYAVAYMGTNGNNGHDGFPGKDGTGIKTTTITYAGSTSGTTPPNNGWTSTVPTVAEGNYLWTKTVWAYTDNSFETGYSVGKMGNTGPAGSNGNPGKVVSDTEPTTKFKGLTWKYSGVVDMPLGNGTKILAGTEYYWNGNNWALYEINAHNINGDNLSVTNGTFKDGKIESIWGSNGVNGTTTIEGSHLQIHSSDSTTNTENTLAIDNRQGYAQVYTERNTGRAITVQASFQGFFVSDSTGPFVRVTPNGIKTSSDKSYNSFQIGAGITINLERRGDIVEATLSGSINYPLTSHTKFSVGLIPVGYRPNRTAYIMVHMTGSINSSHIDVEPNGVCTWWGTSTNTGAPRGCQMWFTDDPLLN

Physico‐chemical properties

protein length:	1904 AA
molecular weight:	204784,10040 Da
isoelectric point:	5,76344
aromaticity:	0,10662
hydropathy:	-0,51691

Domains

Domains [InterPro]

DC_0690
STR
2–739

DC_0690 DC_1328 PTHR24637 DC_1022

DC_1328
STR
931–1017

DC_1328 DC_1328 DC_1328 DC_1328 G3DSA:2.60.40.1830

DC_1328
STR
1011–1093

DC_1328 DC_1328 DC_1328 DC_1328 IPR008982

IPR015027
RBD
1804–1891

IPR015027

NP_116510.1

1 1904

Architecture

STR

RBD

STR 2-739 | STR 830-1827 | RBD 1828-1899 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0690	STR	DC_0690	2	739	Novel HMM	DC_0690	Central	Low	Positional only	29 proteins / 29 hits
DC_1328	STR	DC_1328	830	935	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
DC_1328	STR	DC_1328	931	1017	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
PTHR24637	Unmapped	-	1001	1503	PANTHER	COLLAGEN	-	-	-	-
DC_1328	STR	DC_1328	1011	1093	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
DC_1328	STR	DC_1328	1087	1172	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
DC_1328	STR	DC_1328	1167	1247	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
DC_1328	STR	DC_1328	1243	1329	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
DC_1328	STR	DC_1328	1323	1405	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
DC_1328	STR	DC_1328	1399	1484	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
DC_1328	STR	DC_1328	1479	1561	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
DC_1022	STR	DC_1022	1549	1827	Novel HMM	DC_1022	Central	Low	Positional only	9 proteins / 9 hits
G3DSA:2.60.40.1830	RBD	G3DSA:2.60.40.1830	1797	1899	Merged direct domain	G3DSA:2.60.40.1830	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR008982	RBD	IPR008982	1800	1899	Merged direct domain	Adenovirus pIV-like, attachment domain	C-terminal	Low	Positional only	7 proteins / 7 hits
IPR015027	RBD	DC_0066	1804	1891	InterPro cluster	Receptor-binding protein of phage tail base-plate Siphoviridae, head	C-terminal	High	Text match	10 proteins / 18 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Lactococcus phage BK5-T [NCBI]	31754	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Lactococcus lactis [NCBI]	1358	cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Genbank protein accession

NP_116510.1 [NCBI]

Genbank nucleotide accession

NC_002796 [NCBI]

CDS location

range 16178 -> 21892
strand +

CDS

ATGCAATTAAATATTCATGACTCAACATTAAAAAGGGTTGGTTTTATTAATAATAATTTACCGGATGCTCTTCATTATTTTGATGATAACTGGCACCGTTATCTGGCAGAAGGAACTTCAACTTTTGATTTCTCCGTGAATAAAATAAATAGTTCTTATGCTTTATTAACACTGAAAAGCTATATTAGCTTCACTTATGATGGGGAAGATTATTTGTTTAATATTATAAATATTGAGCAAGATCATTATTCTATGCATTTACAATGTGAGAATTTAAATCTTGAATTAATAAGTGAAGAAGTAGGGGCATACGGAAATACTAAAAGACACAGTATTGTCTGGTATTTAAAAAATGTAGCTAAAATCACTGATGATTTTGTAGAGATTGGAAACAATCCTTTTCCGCTTAATGATGAAGATTCTTCAAATCCAATTCTTTCTTTCGATAGCACAGATACTAAACTTGCTAGAATTATTTCAATTTGCAATAGCTTTAATGCAGAATTTCAGTTTAGAACCCAACTAAAAAATGACGGGACTCTTCAAAATATCACTATTGATCTTTATAAAGAAGAAGGTGTTGGACAAAAGAGAAAAGATGTCACTTTATATTATGGGAAAAATATTGCGGGAATTACTTCAAAAGCAGATCGTACTTCCACTTTTTTCAACGCTACAACAGTGACGGATTCAAAAAATAAATTTAACTGGCTTTCAGTGGAGGGTAAGCATTATAATTCTGATGGTCAATTGGAGTTCTATAAGAATGCTGGAGATAACACAGCTTATGCCCCACTATCAAGAGATATGTTCCCTTCTCAACTTAAATCCTCAAGTTCAGACAGATATACTCGCAAAAATTTAAGTATAGAAGCTACCTCTGCAAATGGTTTGTGGGATTATGCTGTAAGCCAGTTTAAACTATATGCTTATCCTCAAATGACTTATGAAGTAGTAGTATCAGTAAATGCTGTTACAAGTGCTCTTGGAAATGACAAAAAGCTAAATATTGGAGATACAATAATTGTTCAAGACTCAACTTTTGACAAGTCAGATGGTGGATTAATTTTATCAGCAAGGGTATCTCAACAAGAAATAAGTTTTACTAATCCATTAAATAATAAAATAACCTTTACTAATTTTGTTAAATTAAAAAGTGAAATTTCTGCCGATTTATATGGAAGAATGAAAGATTTAGTTGACCAAAATACACCCTATAAGGCGGAAGTAGAAACTACTAACGGATTACAATTTAAGAACGGTAAGGGTTCAACGACCTTAACTGCTCGAATTTATTTCGGGTCAGATTCTACAGAAACTAAAGCCGATAGTTATGAGTGGAGAAAGGATGGAACTCTTGTAGCAAACGTTCAAGAAATAACCGTGGATGCCAGCGGAGTTGTGGATAAAGCAGTTTATAGCTTTAAAGCGACAGTTGGCGGCAAAGTAGTCGCCAGTCAGTCGGTGACTATCACTAATGTTAATGATGGAGCTGACGGTAAGACACCATATTTCCACACAGCATGGTCTTATAGTGCTGATGGTACGGATAGATTCACAACTACTTACCCTAACTTAAATTTACTAGAGGGCAGTAAAGATTTTAGTGGGGGTTGGTGGCTTGTTGAGCGCTCTGAAAACGACGGAATCTATAAAGGTCTAACCGTTAAAAAAAGCGAAGGCCCTGGAATTACTAAGCAATTTATAGCACCTAAAGAAGGTATTTATACTTTCTCAGCTTATGTTAAAAGTTCAGGAAATAATGCAAATATAATAAGAGCTGTTACTTTAAACAATGTAACTGGTAAAATCGTGCCTGATAAGTCGATGGGAATCAACTTTGGTTGGTTGAGAGATTCTTTTCAGGTAACTTTAAAAGCTGGTGACAAGATTTATGCACAATATAATGTAGCTGGTAGCGGTGTTTTATGGAATGCTGGTCATAAGTGGGAAGAAGGCTCTGCTGCTACTGATGATTTAACCTCTAATTATCCTAATTTGAATTTGTTAGAAGGAAGTAAAAAATACACTAAAGATAACCCCAGAATACAATCTTCTAGTGCTAATGATGGTTGGACTACCGTGGACGATGTTTTTGTAAAAAACCTAAAAGCAGGAACATACACCATGAGTGGTAAAGCCGATGCACCTTGGACTAATCATGACACAAGTGGCGCAAACAAAGGTAAAGTTGGACTATGGTTGGTATCAACAACACCTGGATTAGGGGTAAATATATCTTTAGGTGAAACAGTTCCTAAAACAATTGAAGTCCCCAAAGATGGAGATTATTGCGTTAGGGTTAATACCTATTCAAATGGAAAGGATATAGAAGCTCATAAATTTTGGGATTTCAAACTAGAACCAGGTTCAATCGCTACTCCGTGGATGCCAAGTAAAAATGAGTTACAAGAACAACTGACTCCTTGGATGCCTTCATTAAGCGAAGTCACAACTGCTGACTATCCAAGCTACATTGGTCAGTATACAGACTTTATTCAATATGACAGTGCTAAGCCATCCGACTACACTTGGAGTCTGATACGAGGGAATGACGGAAAAGATGGGGCAACAGGTAAAGACGGTGTTGCTGGTAAGGACGGCGTTGGAATAAAAACAACTGTTATCACTTACGCTTTATCTTCAAGTGGAACAGATAAACCAAACACTGGTTGGACTTCACAAGTCCCTACTCTAGTCAAAGGTCAGTATCTCTGGACGAAAACAGTATGGACATACACGGACAGCTCATCAGAAACAGGTTACTCAGTAACTTATATTGCAAAAGACGGAAATAACGGTAATGACGGAATTGCTGGTAAAGATGGCGTTGGAATTAAGAAAACCACAATCACTTACGCAGTCGGAACATCAGGAACAACTGCTCCAGCAAGCGGTTGGAATAGCCAAGTGCCTAACGTTCCTGCTGGACAATTCCTATGGACTAAGACTGTTTGGACTTACACGGACAATACCAGTGAAACAGGATATTCAGTTGCGATGATGGGAGTTAAAGGAGATAAGGGAGACCCAGGCAACAACGGTACTAATGGAATAGCAGGTAAAGATGGTAAGGGAATTAAAGCCACTGCAATCACTTATCAAGCAAGCCCTAATGGCACCACTGCTCCAACTGGTACATGGTCAGCTAGTGTTCCCCCTGTGGCTAAAGGGAGTTTCCTGTGGACACGCACAATCTGGACGTATACAGATAACACTACAGAAACTGGATATGCTGTAGCCTATATGGGTACCAATGGTAACAACGGTCATGACGGCTTTCCAGGCAAAGATGGTACTGGTATCAAAACTACGACTATTACATACGCAGGATCAACAAGTGGAACGACACCACCGAATAATGGTTGGACTTCCACAGTTCCGACAGTTGCAGAAGGTAATTATCTGTGGACTAAGACTGTTTGGACTTACACGGACAATACCAGTGAAACAGGATATTCAGTTGCGATGATGGGAGTTAAAGGAGATAAGGGAGACCCAGGCAACAACGGTACTAATGGAATAGCAGGTAAAGATGGTAAGGGAATTAAAGCCACTGCAATCACTTATCAAGCAAGCCCTAATGGCACCACTGCTCCAACTGGTACATGGTCAGCTAGTGTTCCCCCTGTGGCTAAAGGGAGTTTCCTGTGGACACGCACAATCTGGACGTATACAGATAACACTACAGAAACTGGATATGCTGTAGCCTATATGGGTACCAATGGTAACAACGGTCATGACGGCTTTCCAGGCAAAGATGGTACTGGTATCAAAACTACGACTATTACATACGCAGGATCAACAAGTGGAACGACACCACCGAATAATGGTTGGACTTCCACAGTTCCGACAGTTGCAGAAGGTAATTATCTGTGGACTAAGACTGTTTGGACTTACACGGACAATACCAGTGAAACAGGATATTCAGTTGCGATGATGGGAGTTAAAGGAGATAAGGGAGACCCAGGCAACAACGGTACTAATGGAATAGCAGGTAAAGATGGTAAGGGAATTAAAGCCACTGCAATCACTTATCAAGCAAGCCCTAATGGCACCACTGCTCCAACTGGTACATGGTCAGCTAGTGTTCCCCCTGTGGCTAAAGGGAGTTTCCTGTGGACACGCACAATCTGGACGTATACAGATAACACTACAGAAACTGGATATGCTGTAGCCTATATGGGTACCAATGGTAACAACGGTCATGACGGCTTTCCAGGCAAAGATGGTACTGGTATCAAAACTACGACTATTACATACGCAGGATCAACAAGTGGAACGACACCACCGAATAATGGTTGGACTTCCACAGTTCCGACAGTTGCAGAAGGTAATTATCTGTGGACTAAGACTGTTTGGACTTACACGGACAATACCAGTGAAACAGGATATTCAGTTGCGATGATGGGAGTTAAAGGAGATAAGGGAGACCCAGGCAACAACGGTACTAATGGAATAGCAGGTAAAGATGGTAAGGGAATTAAAGCCACTGCAATCACTTATCAAGCAAGCCCTAATGGCACCACTGCTCCAACTGGTACATGGTCAGCTAGTGTTCCCCCTGTGGCTAAAGGGAGTTTCCTGTGGACACGCACAATCTGGACGTATACAGATAACACTACAGAAACTGGATATGCTGTAGCCTATATGGGTACCAATGGTAACAACGGTCATGACGGCTTTCCAGGCAAAGATGGTACTGGTATCAAAACTACGACTATTACATACGCAGGATCAACAAGTGGAACGACACCACCGAATAATGGTTGGACTTCCACAGTTCCGACAGTTGCAGAAGGTAATTATCTGTGGACTAAGACTGTTTGGGCTTATACGGATAACTCATTTGAAACGGGTTATTCAGTAGGTAAAATGGGAAATACTGGTCCTGCTGGAAGTAATGGTAATCCTGGTAAAGTTGTATCTGATACTGAACCAACCACAAAATTCAAGGGATTAACATGGAAATATTCCGGAGTAGTGGACATGCCCCTTGGTAATGGTACAAAAATATTAGCAGGAACAGAGTATTATTGGAATGGGAATAATTGGGCTTTATATGAAATTAATGCTCATAACATCAATGGAGATAACCTATCAGTAACTAATGGTACATTCAAAGATGGGAAGATAGAGAGTATCTGGGGGAGCAATGGAGTAAATGGTACGACTACTATTGAGGGTAGTCATTTACAAATTCACTCATCAGATTCTACAACTAACACTGAAAATACATTAGCAATTGATAATCGTCAAGGATATGCTCAAGTTTATACTGAACGTAATACAGGGAGAGCCATAACAGTTCAAGCCTCTTTTCAAGGTTTCTTTGTTTCTGATAGCACAGGGCCATTTGTTAGAGTAACTCCTAATGGAATTAAGACTTCGTCTGACAAGTCTTATAATAGTTTCCAAATTGGAGCAGGTATAACAATTAACTTAGAACGAAGAGGAGATATTGTTGAAGCTACATTGTCAGGTTCTATAAATTACCCATTAACATCCCATACTAAATTTTCAGTTGGACTAATTCCTGTTGGATATAGACCTAATAGAACAGCATATATTATGGTACATATGACTGGAAGTATTAATAGTTCACATATAGATGTCGAACCTAATGGAGTCTGTACTTGGTGGGGGACTTCAACTAATACCGGCGCACCACGAGGTTGCCAAATGTGGTTTACTGATGATCCATTATTAAACTAG

Genome Context

Tertiary structure

PDB ID

47af568746e12e0c1e7bb68533b95caf7198c89795813755fbdf50e2e7fd3fdf

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,7468

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence