Protein

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Genbank accession
YP_009639309.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,63
Protein sequence
MSRGSPAWGLDPAENRYVKVPSGEGVIHGGRQSLVIEPVEIPNKTLYSADISEWTTFGGTSIDAFDKNSMIAEGSPVNAARVIGGGSTDDGIKASMSRGTSPNYDAGLWIVEELTAQSFGARWYNSDQLKEYVVDYEWGNGVINTKNIVNYNVRKLTNRGPNGGRVVAVMATINTSNTGDSFRQQLQPSKTTGSDNTYLHYAGTVDGIRSHPTPIVQGGTETTRKAEGWTVNKSGFWNYEEGTVLGEFRVAATSYTDIAFLNGGVNIGLKGNPPYDVSLEETNNYTEIKFSNVAGPFERIKFCASWVGGDVAFSVNGETAKTTADTNFEKLSDDVDWNIGGGSKQPIFLSGLQFIPRRIPDSRVSTLTL
Physico‐chemical
properties
protein length:369 AA
molecular weight: 39942,70280 Da
isoelectric point:5,11258
aromaticity:0,09756
hydropathy:-0,41924

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009639309.1
1 369
Domain Start End Length (AA) Confidence
N-terminal 1 325 325 0,0073
Central domain 326 358 34 0,2609
C-terminal 359 369 10 0,9958
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-325
Central
326-358
C-terminal
359-369

Taxonomy

  Name Taxonomy ID Lineage
Phage Salinibacter phage M1EM-1
[NCBI] 		2681616 Uroviricota > Caudoviricetes > Holosalinivirus >
Host Salinibacter ruber
[NCBI] 		146919 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Rhodothermota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009639309.1 [NCBI]
Genbank nucleotide accession
NC_042348 [NCBI]
CDS location
range 3931 -> 5040
strand +
CDS
GTGAGTCGGGGGTCCCCTGCGTGGGGGCTCGACCCCGCAGAAAATCGCTACGTGAAAGTCCCGTCGGGGGAGGGGGTTATTCATGGGGGGCGACAGTCCCTGGTTATCGAGCCCGTCGAAATACCAAACAAGACTCTGTATAGCGCGGACATCTCGGAGTGGACCACGTTCGGGGGAACCAGTATCGACGCTTTCGACAAAAACTCAATGATCGCAGAGGGGAGCCCCGTCAATGCCGCGCGAGTGATTGGGGGAGGGTCTACCGACGACGGAATCAAAGCCTCAATGTCGAGGGGGACCTCGCCCAACTACGACGCGGGGCTATGGATCGTCGAGGAGCTCACGGCGCAAAGTTTCGGCGCACGATGGTATAACAGCGACCAGTTAAAAGAGTATGTCGTCGACTATGAGTGGGGGAACGGGGTTATAAATACCAAGAATATAGTGAACTACAATGTTAGAAAGTTGACGAACAGGGGGCCGAATGGGGGACGTGTTGTTGCGGTTATGGCAACGATCAACACCTCGAATACTGGGGACTCGTTCCGCCAACAACTCCAACCCTCAAAGACGACGGGGTCCGACAATACATACCTACACTACGCGGGGACAGTTGACGGGATCCGCTCGCACCCGACCCCGATCGTACAAGGGGGCACGGAGACGACGAGAAAAGCGGAGGGCTGGACTGTCAATAAATCGGGGTTCTGGAACTACGAGGAGGGGACGGTCCTGGGCGAGTTTCGAGTTGCGGCGACCTCCTACACCGATATCGCTTTCTTGAACGGAGGGGTCAACATAGGGCTAAAGGGCAACCCTCCGTATGATGTATCCCTAGAGGAGACGAACAACTACACCGAAATCAAATTCTCGAATGTCGCTGGCCCATTCGAGCGGATTAAGTTTTGCGCGAGCTGGGTCGGGGGCGACGTTGCGTTCTCCGTGAACGGGGAGACGGCAAAAACAACGGCCGACACGAATTTCGAGAAGCTGTCGGACGACGTGGACTGGAATATCGGGGGGGGCTCCAAACAGCCCATTTTCTTGTCTGGGCTCCAGTTCATCCCCAGGCGCATCCCCGACAGCCGCGTCTCAACGCTAACACTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e8893159de66bf52ee3fba70adbc0bc88c656f307ab680d69e2ae4230b97b160
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8216
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of ecologically diverse viruses infecting co-occurring strains of cosmopolitan hyperhalophilic Bacteroidetes Villamor,J., Ramos-Barbero,M.D., Gonzalez-Torres,P., Gabaldon,T., Rollesso-Mora,R., Meseguer,I., Martinez-Garcia,M., Santos,F. and Anton,J. — — GenBank