Protein

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Genbank accession
ABA54611.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTDITANVIVSMPSQLFTMARSFKAVAKGKIYIGKIDTDPVNPENQIPVYLEREDGTHIQVPQPIVINAAGYPVYNGQIAKFVTVQGHSMAVYDAYGTQQFYYPNVLKYDPDQLQVKLADPSDGFGDSLVAVKQPGDGTVARTVHDKMAENYTFEDFGAKGDWVTDDTASLNAAALFSQTTGNTIYGSAQKGYKFTSGIQLVNQTTNVSAKFEGAGRERCFLVPVGSMDAAIKIWGTGWGASGQGAVFGAVFKGFEIRANGLTGNALDIRRAGLWCDFSDLRITDPNGIGLYHEAVFDHSYRDIEVRSATGLGIKTYEPKPTDTQGFQENSFLEFHNVNVLSSNGKTTQWEIDGGNAFSFYKCKPSEGTIGIDIKGIAKGFTFYQTYCDGQTDNATIENIGIRVASGCHEINVYGGRFWNTKYAIDQGAGGCSIKGVNIAYDSPTGATVYHLLARNSIDRPLDFDPYMSILNEGGVPNFYTYRAVDANQHSYTPTLSNVNIGSGFTFGAYNKFGNKTRVFVHTELGAGSSITGAIAITAPHISSVTSFVSGTLFDASDNKSYPIQGYIKSGEQGMTLTYSGGLVNDINPFALSSGDMIHIDGEYWS
Physico‐chemical
properties
protein length:606 AA
molecular weight: 65594,32580 Da
isoelectric point:5,27121
aromaticity:0,11716
hydropathy:-0,22789

Domains

Domains [InterPro]
IPR009093
ATT
1–113
IPR009093 IPR011050
IPR009093
ATT
1–100
IPR009093 IPR012334
IPR036730
ATT
2–109
IPR036730
IPR036730
ATT
7–109
IPR036730
DC_1709
STR
77–602
DC_1709
ABA54611.1
1 606
Architecture
ATT
STR
ATT 1-113 | STR 114-602 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABA54611.1
1 606
Domain Start End Length (AA) Confidence
N-terminal 1 167 167 0,9870
Central domain 168 473 307 0,9907
C-terminal 474 606 132 0,9851
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-167
Central
168-473
C-terminal
474-606

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage epsilon34
[NCBI] 		348058 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Anatum
[NCBI] 		58712 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABA54611.1 [NCBI]
Genbank nucleotide accession
EU570103.1 [NCBI]
CDS location
range 16611 -> 18431
strand +
CDS
ATGACAGACATTACAGCCAATGTGATCGTATCGATGCCTTCGCAACTCTTCACTATGGCGCGTTCTTTTAAAGCCGTAGCTAAGGGCAAGATTTATATCGGAAAAATTGACACTGACCCCGTAAATCCTGAAAACCAGATTCCTGTATATCTGGAACGAGAAGATGGTACTCATATTCAGGTGCCACAGCCAATCGTTATCAACGCTGCTGGATATCCGGTATACAACGGACAGATTGCCAAGTTTGTAACTGTGCAAGGCCATTCTATGGCTGTTTACGATGCATACGGCACTCAACAATTCTACTATCCGAATGTGCTAAAGTATGATCCAGACCAGTTACAAGTTAAGTTAGCAGATCCATCAGATGGATTTGGAGATTCCCTGGTCGCTGTAAAACAACCAGGAGATGGGACAGTAGCCAGAACTGTTCATGATAAAATGGCTGAGAATTATACCTTTGAAGATTTTGGCGCAAAAGGTGACTGGGTTACCGATGATACAGCTTCGTTAAATGCTGCTGCGCTGTTCTCGCAGACAACAGGCAATACTATTTACGGGAGCGCCCAAAAAGGATACAAATTCACTTCTGGAATTCAATTAGTAAATCAAACAACCAACGTCTCGGCAAAATTCGAGGGCGCTGGACGTGAGCGTTGTTTCCTCGTGCCAGTGGGGTCGATGGATGCCGCAATAAAAATTTGGGGTACTGGATGGGGTGCTTCTGGACAGGGTGCGGTATTCGGGGCGGTGTTTAAAGGTTTCGAAATACGAGCTAATGGACTCACCGGTAACGCTCTAGATATCAGACGTGCAGGTTTGTGGTGTGACTTTTCAGATCTAAGGATAACAGACCCTAATGGAATAGGGTTGTACCACGAGGCCGTCTTTGATCACAGTTACCGTGATATAGAAGTGCGTTCGGCAACTGGTTTGGGGATTAAAACCTATGAGCCTAAACCTACTGATACACAGGGGTTTCAGGAGAATAGTTTCCTGGAGTTTCATAACGTCAACGTACTATCATCAAACGGAAAAACAACGCAATGGGAAATTGACGGCGGAAACGCGTTCAGTTTTTATAAGTGCAAACCGTCTGAAGGAACAATTGGAATTGACATAAAGGGGATTGCTAAGGGATTTACTTTCTACCAGACATACTGTGATGGGCAAACAGATAACGCCACTATAGAAAATATTGGTATTAGAGTTGCATCGGGGTGCCATGAGATTAACGTATATGGCGGTCGTTTCTGGAATACTAAATATGCTATAGACCAGGGCGCTGGCGGCTGTTCAATTAAAGGTGTAAACATCGCATATGATTCCCCGACTGGTGCAACTGTTTACCATTTGCTCGCTAGAAATAGCATTGACCGCCCTCTTGATTTTGACCCATACATGAGTATCCTTAATGAAGGTGGCGTGCCAAACTTTTACACTTACCGCGCTGTTGACGCCAATCAACACAGTTACACGCCTACATTATCTAATGTTAACATAGGATCGGGTTTTACATTCGGCGCATACAATAAGTTCGGAAACAAAACAAGGGTTTTTGTTCACACTGAATTGGGTGCTGGAAGTTCTATTACAGGAGCCATAGCTATCACGGCGCCACATATCTCGTCAGTAACATCTTTTGTTAGTGGTACTCTTTTTGATGCGTCAGACAATAAATCATATCCTATTCAGGGCTACATAAAATCAGGAGAGCAGGGTATGACACTTACGTATTCAGGGGGGCTAGTTAATGACATAAACCCATTCGCTCTATCATCCGGTGATATGATACATATTGACGGTGAGTATTGGTCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e69c07befc08b05e02e63eeb0204bd1507742f532dbd2fc90ed8c2c60f490a1b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8188
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Homology between two different Salmonella phages: Salmonella enterica serovar Typhimurium phage P22 and Salmonella enterica serovar Anatum var. 15 + phageepsilon34 Salgado,C.J., Zayas,M. and Villafane,R. 2004 15215687 GenBank
Identification of the Salmonella phage epsilon 34 tailspike gene Zayas,M. and Villafane,R. 2007 17113244 GenBank
Genomic analysis of bacteriophage epsilon 34 of Salmonella enterica serovar Anatum (15+) Villafane,R., Zayas,M., Gilcrease,E.B., Kropinski,A.M. and Casjens,S.R. 2008 19091116 GenBank