Protein

View in Explore
Genbank accession
YP_009856530.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,70
Protein sequence
MAVTTKIIVQQILNIDDTKATASKFPRYTVALGNSISSITASELVSSIEAAAKSAAAAKDSEIAAKTSELNAKNSEQEAVISAGASEASATQSATSATQSAASADRSAESAAAAKVSETNAKASETKAKASETNAKASETNAKTSETKAKTSETNAKTSETNAAASAAAAKISETKTKTSETNAAASAADSKGFRDEAETFARQAAASASAAKVSETNAKASETNAKSSETKAKASETNAASSATSASQSVTTIQGLKSDVETLKSDTQTIKDSAVAETTALKSDVEQLKIDTQGIKDSAVTETTALKDAAAASATKAANSATEAGKQASNAGTSATAAKNDADRAKTEADRAEAAANDTPEIQPFPDVWIPFNDSLDMLAGFAPGYKKITVGEDVITMPTDKVVTFSRASTATYINKSGVLTVAEIDEPRFEKEGLLIEGQRTNYFLNSNSPALWNKTSSIGIEELNDGRFNYGHVTVTNESPSAAGYQILSMVIGNAISGTTGDYITVSCRARAGSNSRLRMRLATVTEGVAVFHSDSVLNLDTGKVTSGPLYTSKSVKDGDWWYFETTFGFNADLSVVCRFEIICLENESVIQTGASLDLATPQVEIGSCASSLIITGSAPATRASDMVLIPTDCNQPSSIPLSLLVEVNRNWDIAPNSAPRIVHVANLPEDQLLVAFRVPSSVTVEPLPYSQLGVSQSYTPVSTKTSGKMVTGFVCNKNSELRCVTNAVFGAPVKTTWKAGLSKNLRIGGISADGGKHLFGHVRNFRIWHKALTDRQLKESV
Physico‐chemical
properties
protein length:786 AA
molecular weight: 82085,16700 Da
isoelectric point:5,56763
aromaticity:0,04835
hydropathy:-0,27201

Domains

Domains [InterPro]
DC_0608
ATT
2–202
DC_0608 DC_0141
G3DSA:1.20.5.1700
Unmapped
239–317
G3DSA:1.20.5.1700 Coil
YP_009856530.1
1 786
Architecture
ATT
STR
ATT 2-202 | STR 234-733 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009856530.1
1 786
Domain Start End Length (AA) Confidence
N-terminal 1 615 615 0,5262
Central domain 616 775 161 0,4267
C-terminal 776 786 10 0,9961
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-615
Central
616-775
C-terminal
776-786

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage L6jm
[NCBI] 		2713222 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus L6jm
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009856530.1 [NCBI]
Genbank nucleotide accession
NC_048852 [NCBI]
CDS location
range 81783 -> 84143
strand -
CDS
ATGGCAGTAACTACTAAAATTATCGTACAGCAGATATTAAATATTGATGATACTAAAGCTACTGCTAGTAAATTTCCTAGATATACAGTAGCTCTAGGTAATTCTATTAGCTCTATTACTGCAAGTGAGTTAGTATCTTCTATTGAGGCAGCAGCTAAGTCTGCTGCAGCTGCAAAAGATTCTGAGATAGCTGCTAAGACTTCAGAACTTAACGCTAAGAACTCTGAACAGGAAGCTGTTATCTCCGCTGGAGCTTCTGAAGCCTCTGCCACTCAGTCAGCTACATCTGCTACTCAATCTGCTGCATCAGCGGATAGATCTGCAGAATCAGCCGCAGCAGCTAAAGTATCTGAGACTAATGCGAAAGCTAGTGAAACTAAGGCTAAAGCCTCAGAGACTAATGCAAAAGCATCAGAAACTAATGCTAAAACTAGCGAGACCAAAGCTAAAACCTCAGAAACTAATGCTAAAACTAGTGAGACCAACGCTGCTGCTTCCGCTGCCGCTGCAAAAATTAGTGAGACTAAGACTAAAACTAGTGAGACCAATGCTGCTGCTTCCGCTGCCGATTCTAAAGGTTTTAGGGATGAAGCAGAAACATTCGCTAGACAAGCTGCAGCATCTGCATCTGCTGCTAAAGTATCCGAGACTAATGCAAAAGCATCAGAAACTAATGCAAAGTCTAGCGAAACTAAAGCTAAGGCTAGTGAAACAAATGCTGCTAGCTCTGCAACTTCAGCTAGTCAATCAGTAACCACTATTCAAGGTCTAAAATCAGACGTTGAGACATTAAAATCTGATACTCAAACCATTAAAGATAGTGCTGTAGCTGAAACTACAGCTTTAAAATCAGATGTTGAGCAGCTAAAAATAGATACACAAGGTATTAAGGATAGTGCGGTAACGGAAACTACAGCGCTAAAAGATGCTGCCGCTGCTTCAGCTACGAAAGCAGCTAATAGCGCCACCGAAGCTGGAAAACAAGCAAGCAACGCAGGTACAAGCGCAACCGCAGCTAAAAACGACGCTGACCGTGCAAAGACAGAAGCTGACCGTGCGGAAGCTGCTGCCAACGATACACCAGAAATCCAGCCTTTCCCTGATGTGTGGATTCCGTTCAATGATTCACTGGACATGCTAGCAGGTTTCGCGCCTGGTTACAAAAAAATAACAGTTGGCGAGGATGTTATTACTATGCCAACAGATAAAGTGGTTACATTTTCACGTGCTTCAACAGCAACTTATATTAACAAATCAGGTGTATTGACTGTTGCGGAGATTGACGAACCTCGATTTGAAAAAGAAGGTTTGCTAATTGAAGGGCAGAGAACTAATTATTTCTTAAACTCCAACTCACCAGCATTATGGAATAAAACATCATCGATAGGTATCGAGGAGTTAAATGATGGTCGATTCAATTATGGGCACGTAACTGTAACAAACGAGTCACCAAGTGCTGCCGGCTATCAAATTTTGAGCATGGTGATAGGTAATGCTATTAGCGGAACAACTGGTGATTATATTACAGTGTCGTGTCGTGCTAGAGCAGGTTCTAATTCTCGGCTTCGAATGAGGCTTGCAACTGTAACTGAGGGTGTAGCAGTTTTTCATTCTGATTCAGTTCTCAATCTTGATACTGGCAAGGTAACTTCTGGTCCTTTATATACCTCAAAATCGGTAAAAGATGGTGATTGGTGGTATTTTGAAACGACATTCGGATTTAACGCAGATCTATCTGTTGTTTGTCGTTTTGAGATTATATGCCTTGAAAATGAAAGTGTTATACAAACAGGTGCATCGCTTGACTTAGCTACACCTCAAGTAGAGATCGGATCGTGCGCTTCGTCGCTTATTATTACAGGAAGTGCACCAGCAACTCGCGCAAGTGACATGGTCCTAATACCAACTGATTGCAATCAACCATCATCTATACCGTTAAGTCTACTTGTTGAGGTAAATAGAAATTGGGATATAGCCCCAAACTCAGCTCCAAGGATAGTACATGTAGCAAATTTACCAGAAGACCAGTTATTAGTTGCTTTCAGGGTTCCATCAAGCGTTACAGTAGAACCACTGCCTTATTCTCAGTTGGGAGTCAGCCAGTCATATACGCCAGTATCAACAAAAACAAGCGGGAAAATGGTGACAGGTTTCGTTTGTAACAAAAACTCAGAATTAAGATGCGTAACAAACGCTGTGTTCGGTGCGCCTGTGAAAACAACATGGAAAGCGGGTTTATCTAAAAATCTTCGTATCGGTGGCATTAGTGCAGACGGAGGGAAGCACCTTTTCGGACATGTCAGAAACTTTAGAATCTGGCATAAAGCATTAACCGATCGTCAGTTGAAGGAGTCAGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3ea086447c93f4393269390755baa5a645ac8d3902cf4cb26217570d323f3b35
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7092
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of polyvalent bacteriophage infecting Salmonella choleraesuis and Escherichia coli Zhang,Y., Lin,Y. and Zhu,W. 2021-07-14 — GenBank