Protein

View in Explore
Genbank accession
YP_008318293.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSNSNYMYFVDFEKFGIRSDGTEARATTDGWIAALREAVELGYHTVYVPEGLYLIDAVSTVGSLPEYGGGLMFPSNIEVIFHERALFQVAPNSSTGYACFNLENVENVTLRGGTIIGDRYEHDYVTDGVPDKRKTHEWGHGIHIRGCRNITVENATVMNCTGDNIWVPSKGMMNWEDSTYIPSEGITIRKCILIRGRRNNLATNGCLGMNVDDCDFIEAGGDTIGPAFGIDLEGFAENSIKYDHPYEINITNCRFKRNGKGALNINVTGKVHATNNFSDDVFNYGFSTDSTISNNTITNETGVDKPYGIDSIRKSSSETGNRTIITGNQIRGFATGICARGVGVIVSQNYLEDISSVGINPYLSEDVMVANNTINSDCLHVWVRNSVDVKVGNNKGKGAENYYGIKVEDSSDVVVNDNKHVAKGGIQVARSTNVRIKDNDLTLIGNGNGISWDKISQVKLVKSNWISCAVAAAISGYADAYSTIISYNILEDCKYLIAIYLNGGAHHMLKGNDIMFRRGANGGYGVQLVNTTQARLISNDVRTMDGCTLHASYDSTGSTYTKYAYNTYIGKINLGQADTENYNTKLD
Physico‐chemical
properties
protein length:587 AA
molecular weight: 64268,98050 Da
isoelectric point:5,45463
aromaticity:0,09029
hydropathy:-0,30170

Domains

Domains [InterPro]
IPR012334
STR
13–337
IPR012334 DC_0453
IPR011050
STR
33–376
IPR011050 IPR011050
IPR006626
Unmapped
105–146
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR039448
ENZ
289–440
IPR039448
IPR012334
STR
397–583
IPR012334
YP_008318293.1
1 587
Architecture
STR
STR 13-585 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008318293.1
1 587
Domain Start End Length (AA) Confidence
N-terminal 1 23 23 0,9451
Central domain 24 576 554 0,9973
C-terminal 577 587 10 0,2641
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-23
Central
24-576
C-terminal
577-587

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage phiNIT1
[NCBI] 		207656 Uroviricota > Caudoviricetes > Herelleviridae > Nitunavirus > Nitunavirus NIT1
Host Bacillus subtilis subsp. natto
[NCBI] 		86029 Bacteria > Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008318293.1 [NCBI]
Genbank nucleotide accession
NC_021856.1 [NCBI]
CDS location
range 14910 -> 16673
strand -
CDS
TTGTCGAACTCGAACTATATGTACTTTGTTGACTTTGAGAAATTCGGAATCAGGTCTGATGGGACAGAGGCTAGAGCAACCACTGACGGGTGGATTGCTGCACTTAGAGAGGCTGTAGAGCTAGGATATCACACGGTATATGTTCCAGAGGGGCTTTACCTTATTGATGCTGTAAGCACTGTAGGCAGCCTTCCAGAGTACGGTGGTGGCTTAATGTTCCCATCAAACATCGAGGTCATCTTTCATGAGAGAGCGCTATTTCAGGTAGCGCCAAATAGTTCAACAGGGTACGCCTGCTTCAACCTTGAAAATGTGGAAAATGTGACTCTTCGAGGAGGAACGATCATCGGGGACCGCTACGAGCATGACTACGTTACAGATGGAGTACCAGATAAACGTAAAACTCATGAGTGGGGTCACGGAATCCATATTAGGGGCTGCCGTAACATCACAGTAGAGAACGCAACTGTCATGAACTGCACAGGTGACAACATCTGGGTGCCTTCTAAGGGTATGATGAACTGGGAGGACAGCACTTACATACCCTCTGAGGGGATCACTATACGTAAATGTATTCTGATTCGAGGAAGACGTAATAACCTAGCCACGAACGGCTGCCTTGGCATGAATGTTGATGACTGTGATTTCATCGAAGCTGGCGGAGACACTATCGGACCTGCATTCGGTATCGACTTAGAGGGATTCGCTGAAAACAGCATTAAGTACGACCATCCTTATGAAATCAACATCACAAACTGCCGCTTCAAAAGAAATGGTAAAGGCGCCTTAAACATCAACGTTACAGGGAAAGTTCATGCTACTAATAACTTCTCCGATGATGTGTTCAACTATGGGTTCTCGACAGATAGTACGATCAGCAATAACACGATCACTAACGAGACAGGGGTAGACAAACCATACGGTATAGACTCCATCCGTAAGTCCTCCTCCGAAACTGGTAACCGTACAATCATCACAGGTAACCAGATTAGAGGATTTGCTACAGGTATTTGTGCCCGAGGTGTAGGTGTTATTGTCAGCCAAAACTATCTTGAGGATATTAGCTCCGTGGGGATCAATCCTTACCTTTCCGAAGATGTTATGGTAGCTAATAATACGATTAACAGTGATTGCCTGCATGTATGGGTCCGTAACTCTGTGGATGTTAAGGTAGGCAACAACAAGGGTAAGGGCGCTGAGAATTACTACGGAATCAAAGTAGAGGACTCCAGTGATGTAGTTGTCAACGATAACAAACATGTAGCCAAAGGCGGCATTCAGGTTGCCCGGTCAACAAATGTACGTATCAAAGACAATGATTTAACTCTTATCGGTAATGGTAACGGTATTAGCTGGGACAAGATTTCACAAGTTAAGTTGGTTAAATCCAACTGGATAAGTTGTGCTGTAGCAGCTGCTATTTCTGGCTACGCAGACGCTTACTCCACTATTATCTCCTATAACATCTTAGAAGACTGCAAGTACCTAATCGCTATCTACTTGAATGGCGGGGCACACCACATGCTTAAAGGTAATGACATCATGTTCAGAAGAGGAGCTAACGGAGGATACGGAGTTCAGTTAGTAAACACCACACAAGCTAGATTAATCAGCAATGATGTCCGTACAATGGACGGCTGCACTCTGCATGCTTCTTACGACTCCACAGGATCAACATACACAAAGTATGCGTATAACACTTACATCGGAAAGATCAACCTTGGTCAAGCAGACACTGAAAACTACAACACAAAATTAGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
de90b85392395f00c820c6e36768a26d4efd3f41b093f620c9df81baeebd3dee
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8771
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
phiNIT1 genome sequensing Ozaki,T. and Kaneko,J. 2011-11 — GenBank