Protein

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Genbank accession
AGH56128.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MARSGILGQSKPAGTTNTVLYAAPTNKSASAVLTIANDGTGAAYDVALKDYDQSLTMDASTYLFHEGDVITSQRFTLSPNITPDEAITPGDQLTSASGEKKAKFHGFYIPETTTIHVRKVSLTAITVESPSGDFNIGATLTKGTAPNATTALIYDAYNAGSNLIVQVGPSTINGSGSAFAAGDSVSASSGGSATIATGGIGTAGDEFVFSTDNETTFGFYAQTSDYDLNVFTDRTYRFDVSDSSMSGRLLRLSSTINGEYGPDNDAATTGDNGTEYTDGKTTNGTAGSTGAYVQYDFTQGTPPSVLYWYDGNTGSNAGAGYGGSERYLGTTTSYEYSEIYVYDIENTWSNSTDTFAVGNSSFTVTAQTAGKWGVVRDYTGTALKIIKGLNSADFAGSEVFLDSPLKAGATRSFATVSSIGTATTALEAQHYIVKDKTNAANNIDKITSIVVGPGQRVIVESATQNNIFSLVGFEDNSTELSVRNYTSS
Physico‐chemical
properties
protein length:488 AA
molecular weight: 51019,81970 Da
isoelectric point:4,45410
aromaticity:0,09836
hydropathy:-0,25758

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Syn30
[NCBI] 		536474 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56128.1 [NCBI]
Genbank nucleotide accession
HQ634189 [NCBI]
CDS location
range 29626 -> 31092
strand -
CDS
ATGGCAAGATCAGGCATTTTAGGACAATCTAAACCCGCTGGTACTACAAATACAGTTTTGTATGCAGCACCAACAAATAAATCTGCTAGCGCAGTATTAACCATTGCAAACGATGGTACGGGAGCAGCATATGATGTTGCTCTGAAAGATTACGACCAAAGTCTAACAATGGACGCTAGCACATATCTCTTCCATGAAGGTGATGTGATTACTAGTCAGAGATTCACTTTGAGTCCTAATATTACACCAGATGAAGCGATTACTCCTGGTGATCAACTTACTAGTGCTAGTGGTGAAAAGAAAGCAAAGTTCCATGGATTTTACATTCCAGAAACTACAACAATTCATGTAAGGAAAGTATCTCTTACTGCTATTACAGTTGAAAGTCCTAGTGGTGATTTTAACATTGGTGCAACTTTAACCAAAGGCACTGCACCTAACGCAACAACTGCATTAATTTATGATGCATACAATGCAGGTTCCAATCTTATCGTTCAAGTTGGACCTTCTACCATCAATGGTAGTGGTAGTGCATTTGCTGCTGGTGACTCTGTTAGTGCAAGTTCTGGTGGTTCTGCAACTATTGCTACTGGTGGTATTGGTACTGCTGGAGATGAGTTTGTATTCTCTACAGATAACGAGACTACCTTTGGTTTCTATGCACAAACGTCTGACTATGATCTGAATGTATTCACAGACAGAACTTACAGATTTGATGTTTCCGACTCTTCTATGAGTGGCAGATTGTTGAGACTTTCCTCTACCATCAATGGTGAGTATGGTCCTGATAATGATGCTGCTACCACAGGAGATAATGGTACTGAATATACTGATGGTAAGACTACTAATGGCACCGCTGGATCTACTGGCGCATATGTTCAGTATGATTTTACTCAAGGTACACCTCCATCAGTTCTCTATTGGTATGATGGAAACACTGGATCTAACGCTGGTGCAGGATATGGTGGTTCTGAAAGATATCTTGGCACAACTACATCATATGAATATAGTGAGATCTATGTTTATGATATTGAAAACACATGGTCCAACTCAACTGATACATTTGCTGTAGGTAATAGTTCGTTTACAGTAACTGCTCAGACCGCTGGTAAGTGGGGTGTTGTCAGAGATTACACTGGCACCGCACTTAAGATTATTAAAGGTCTTAACTCTGCTGATTTTGCAGGTTCTGAAGTCTTCTTAGATTCGCCTCTTAAAGCAGGTGCAACTAGAAGTTTTGCCACAGTTAGTTCTATTGGCACTGCAACAACAGCACTTGAGGCACAGCATTACATTGTTAAAGATAAGACTAATGCTGCAAACAACATTGACAAAATTACGTCGATTGTTGTTGGTCCTGGACAACGTGTGATTGTAGAGAGTGCAACGCAAAATAACATCTTTTCCTTGGTTGGATTTGAAGACAACTCTACTGAACTTTCCGTAAGGAACTATACCTCCTCCTAA

Tertiary structure

PDB ID
c2516823e93834338f5c90be0a6f04601a7751af151425d344a547895ea80d5e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4328
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn30 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank