Protein

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Genbank accession
YP_009612990.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNNNIKYHISDSADSVFFSGPDWPSSVETVSDALNEIAPWALTVNGLPIATEVVPGIIRIATEAEAAAGMSDNTVITPNLLRIAMQTPQATDAIIGNTRYATNDEALALSINTAAITPSKLGYVIANKGSTEAARGTIRISTAAQAISGTDDTTAMTPLKTKQAIAQFSEAWGTASESSDGVVRLATVAQALAGVLRDGYAVSPYTLSRMAGTESSAGLFKVATNSQTLALADNTVVITPAKLSVLNATSTQKGLVRLLNTESSQANTALSANAQVLYRSGGTMTGNINFTENNQGLLWNRNTDLAAITFKNDSDADTNSYLLFAVGDNSNEYFRWTTRAGGVDTTIATLRPGGHLWLAGNIDINDMYVRCDARLKTDIRPIKDALAKIDSLDTGIYTKHKSLTDDTVIGKEAGIFAQQLQKVLPEGVKTLDDGTLTVSPMSLIALLIEANKELKSRLEKLEEKI
Physico‐chemical
properties
protein length:465 AA
molecular weight: 49409,05690 Da
isoelectric point:5,00430
aromaticity:0,05376
hydropathy:-0,08495

Domains

Domains [InterPro]
DC_0176
STR
1–424
DC_0176 Coil
IPR030392
CHP
371–429
IPR030392
IPR030392
CHP
372–465
IPR030392
DC_0131
RBD
408–465
DC_0131
YP_009612990.1
1 465
Architecture
STR
RBD
STR 1-424 | RBD 425-465
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage AS-gz
[NCBI] 		2026082 Uroviricota > Caudoviricetes > Pantevenvirales > Tulanevirus > Tulanevirus asgz
Host Aeromonas salmonicida subsp. salmonicida
[NCBI] 		29491 Bacteria > Proteobacteria > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009612990.1 [NCBI]
Genbank nucleotide accession
NC_042019 [NCBI]
CDS location
range 2102 -> 3499
strand +
CDS
ATGAATAACAATATCAAATATCATATTTCGGATTCAGCGGATTCGGTATTTTTCTCTGGGCCAGATTGGCCCAGTTCAGTTGAAACCGTATCAGACGCATTGAATGAAATAGCGCCATGGGCATTAACTGTTAATGGCCTGCCGATAGCAACTGAGGTTGTACCTGGCATCATTAGAATTGCTACTGAAGCTGAAGCCGCAGCTGGCATGAGTGACAATACTGTTATTACTCCTAATCTTCTGCGGATTGCGATGCAGACGCCGCAGGCTACCGACGCCATTATTGGTAATACTCGTTACGCAACAAATGACGAAGCTTTGGCCTTATCTATTAACACCGCTGCAATAACACCTTCGAAACTGGGGTATGTCATTGCAAATAAAGGTTCTACCGAAGCGGCAAGAGGAACAATCCGTATATCGACTGCTGCCCAGGCAATATCTGGCACCGATGATACCACTGCTATGACTCCTCTTAAGACCAAGCAGGCTATTGCGCAATTCTCAGAAGCATGGGGAACTGCATCAGAAAGCTCAGACGGAGTTGTCCGTTTGGCCACTGTGGCTCAAGCTTTAGCAGGAGTTCTTAGAGATGGCTATGCCGTTAGTCCATACACGTTATCAAGAATGGCAGGGACGGAAAGCTCAGCTGGATTGTTTAAAGTAGCAACAAATTCGCAAACATTAGCATTAGCTGATAACACTGTCGTTATTACCCCTGCTAAACTTTCCGTATTGAATGCTACTAGCACTCAAAAAGGATTAGTTCGCCTTCTTAATACCGAAAGCTCACAAGCGAATACGGCTCTTTCTGCTAATGCCCAGGTGTTGTATCGCTCGGGTGGCACAATGACTGGTAATATCAATTTCACAGAAAACAATCAAGGACTTTTGTGGAATAGAAATACCGATTTGGCTGCTATAACATTCAAAAACGATAGTGACGCTGACACAAATTCGTATTTGCTTTTTGCTGTTGGAGACAATAGCAACGAGTATTTTAGATGGACAACTCGTGCCGGGGGTGTAGATACCACAATTGCTACACTTAGGCCAGGTGGTCATTTATGGCTAGCCGGAAACATCGACATTAACGATATGTATGTTCGTTGCGATGCCAGGTTAAAAACCGACATTCGGCCTATTAAAGACGCGCTTGCGAAGATAGATAGCCTTGACACTGGGATTTACACAAAACATAAATCTTTGACTGACGATACTGTGATAGGCAAAGAGGCAGGTATTTTTGCTCAGCAATTGCAAAAAGTTTTACCAGAAGGTGTTAAAACACTTGATGACGGAACTCTTACTGTTTCTCCAATGTCTCTCATTGCATTACTGATTGAGGCTAATAAAGAGCTTAAATCCAGATTAGAAAAACTCGAGGAAAAAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d4c5f244837ba6eab11949ee3f9f53f360570bdae04aaedb93bc697a942e3b6f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7683
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
In vitro design and evaluation of phage cocktails against multidrug-resistant Aeromonas salmonicida Chen,L., Yuan,S. and Ma,Y. 2018-07-06 — GenBank