Protein

View in Explore
Genbank accession
YP_009168384.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTIELDDVTSGYNVSVINGNFQTIEDKMNQEVLWRGASAVAGESKMERDLDMDGHRILNADLDGSTITNDRAVRVSTGYLPPIPQTLEERKGAVVSFDINTGDPIALAPASGSAVDVLNQLANNSDVTKGDALVALKQPFTGAIARTVHSKMADSVSAKDFATGDGVTDDYAKLMQAYQWAAAHGKSLFIPAGIYMFSQKLVFDTPGVFIFGEGMNSTSLRFTGTGTAIEFNDSIPNNGIYSFSGGIADLEVVGNANTTNIIYNKNVNHWYLSRVNAREASTINGVGLRVEGPTGCHIQHFVCSTNAQLMSSRPFVGIWMDAIITTGGRTAATTLLHPIIEGMTGDGVHLRGCDQLTWIGGTSENNGGNGVTFSDNGQPRINTLIGVGFEANLGFADIFDAGQMNRFINCTSTKLSYFGVTSLFAELSGGYHQSVLVEGNFTTLHDLKYSFFANGGTFVPKENTKYWNLFNTQTSAIVNLPKPGHLLALTGSPMLFTNTFGFPIDVMMHVDSAAVVSSVFFCEGTTPNVKVDATGGIRLDPGNSLQITYTGSPTFYWMPR
Physico‐chemical
properties
protein length:560 AA
molecular weight: 60124,87260 Da
isoelectric point:5,08643
aromaticity:0,09464
hydropathy:-0,05000

Domains

Domains [InterPro]
IPR012334
STR
114–375
IPR012334 DC_1620
IPR011050
STR
150–443
IPR011050
YP_009168384.1
1 560
Architecture
STR
RBD
STR 114-443 | RBD 453-560
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009168384.1
1 560
Domain Start End Length (AA) Confidence
N-terminal 1 169 169 0,9707
Central domain 170 465 297 0,9878
C-terminal 466 560 94 0,9836
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-169
Central
170-465
C-terminal
466-560

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CVT22
[NCBI] 		1622234 Uroviricota > Caudoviricetes > Zobellviridae > Citrovirus coptotermitis >
Host Citrobacter sp. TM1552
[NCBI] 		1676276 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Citrobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009168384.1 [NCBI]
Genbank nucleotide accession
NC_027988 [NCBI]
CDS location
range 555 -> 2237
strand +
CDS
ATGACAATTGAGCTTGATGATGTAACTTCTGGATACAACGTGTCTGTTATTAATGGCAACTTTCAGACAATTGAAGATAAGATGAATCAAGAAGTGTTATGGAGAGGAGCTTCAGCAGTAGCTGGAGAATCTAAGATGGAACGGGATTTAGATATGGATGGACACCGTATTCTAAATGCTGATTTAGATGGTTCTACAATTACCAACGATAGAGCTGTACGTGTTTCTACAGGATATCTCCCTCCTATTCCTCAGACATTAGAAGAGAGAAAAGGAGCTGTTGTCTCTTTTGATATTAACACAGGAGACCCAATTGCGTTAGCCCCTGCTAGTGGAAGTGCTGTAGATGTATTGAACCAATTAGCTAACAACTCAGATGTCACTAAAGGAGATGCGTTAGTTGCGTTAAAGCAACCATTCACTGGAGCTATTGCTCGAACTGTTCATAGCAAGATGGCTGACTCAGTTAGTGCTAAAGATTTTGCTACAGGTGATGGTGTTACAGATGACTACGCAAAACTAATGCAAGCCTATCAATGGGCAGCAGCACATGGGAAGAGTTTGTTTATTCCTGCTGGCATCTACATGTTCTCTCAGAAACTTGTATTTGACACCCCCGGTGTATTCATCTTCGGTGAAGGGATGAATAGCACCTCTCTGCGTTTCACAGGAACTGGTACAGCTATTGAGTTTAACGATTCTATTCCTAACAACGGAATTTATTCTTTCAGCGGAGGTATTGCTGATTTAGAAGTTGTAGGGAATGCCAACACTACAAACATCATCTATAACAAGAACGTAAACCATTGGTATCTCTCTCGCGTTAACGCTCGTGAAGCCTCTACAATTAATGGTGTAGGATTACGCGTTGAAGGGCCAACTGGGTGTCACATTCAACATTTCGTATGTTCTACGAATGCCCAGCTTATGTCTAGCCGTCCTTTTGTAGGTATTTGGATGGATGCCATCATCACTACAGGTGGTCGTACAGCAGCTACAACTCTTCTCCATCCAATCATTGAAGGGATGACAGGAGATGGTGTACATCTGCGTGGATGTGACCAGCTCACCTGGATTGGTGGTACTTCTGAGAATAACGGTGGTAATGGTGTAACATTCTCAGATAATGGACAGCCACGTATCAATACACTTATTGGTGTAGGGTTTGAAGCAAACTTAGGCTTTGCTGACATCTTTGATGCGGGACAAATGAACCGCTTCATAAACTGTACCTCTACCAAACTTAGTTACTTTGGCGTAACCTCTTTATTTGCTGAACTATCTGGCGGTTATCATCAGAGTGTTCTGGTAGAAGGTAACTTCACCACTCTGCATGATTTGAAATATTCCTTTTTTGCTAATGGTGGTACTTTCGTTCCTAAAGAAAACACTAAGTATTGGAATCTTTTCAACACCCAAACCAGTGCTATTGTAAACCTTCCTAAACCGGGACACCTGCTTGCTTTAACAGGAAGCCCTATGTTATTTACTAATACATTCGGATTCCCTATTGATGTGATGATGCATGTGGATAGTGCGGCTGTAGTGTCTTCCGTATTCTTCTGTGAAGGAACCACCCCTAACGTTAAAGTGGATGCAACAGGTGGTATTCGTCTTGACCCCGGTAACTCTTTACAAATAACATACACAGGTTCTCCTACGTTCTATTGGATGCCACGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
97d5af3f19be50bd540e0517673a0c1806621a91c1e1a6735233b3fa5b243748
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7876
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50