Protein

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Genbank accession
QDK04510.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MDFFTQPKGSTIGVLRDGRTVQEAFDSLMYTEVTLKSGRENAEANRVSLQAAADSTKLISVPAGEYFVSAHITLRTGNVIVGRGANAFSSGYTRLVCETTGEGVFWYTGDTSTGQKRMPQIYNMGLKGDYPIRFNDERTAVISDQAASNVPYGMVPVVQFCTIDPLTNGVGIGISASKMFDGVFSFNEIANFDTGVLLNGCDLMYVAHNRIRNAYKYMVLELGVGTFGSQNEIYHNDILHAGSADCIFIKSTARHVRIYDNYLEQASGTSGQALIGFIDASVVDAPVFNGNAAPVRASTIIKDNRIDGQHFAKYFVYKYQPLGQTYGVIEDVSTVGPNTGLGANHLVLVDASGVTIDRVPFLYNSVQPCSFRFSGPRFGKWNGYNSESDYALNMTGSNMSMWGTSLGGNNLKDYLSARGNSLILSSGFTAAAVLQFPSGTLIRPNSQYAIKVTAKCSSGSEALTFAGVANGTGQTSVTMQLSTEPVSATAQFTSGSTQSGFSLGRSNNGADIEIIAIEFIKLYSVEYSVASGTGTVTVYRSTGDIVISASGNNQFPAYTVLRYIGGSLKEVYKSVTDSAVIDIAWSVSGQTLTVNITGSGGGKRFSVTQEEV
Physico‐chemical
properties
protein length:612 AA
molecular weight: 65447,56280 Da
isoelectric point:5,74338
aromaticity:0,10131
hydropathy:-0,04150

Domains

Domains [InterPro]
DC_1231
ATT
1–149
DC_1231 DC_0556
IPR011050
STR
49–359
IPR011050
QDK04510.1
1 612
Architecture
ATT
STR
RBD
ATT 1-149 | STR 150-359 | RBD 360-612
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDK04510.1
1 612
Domain Start End Length (AA) Confidence
N-terminal 1 42 42 0,9579
Central domain 43 399 358 0,9805
C-terminal 400 612 212 0,9430
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-42
Central
43-399
C-terminal
400-612

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage KMI1
[NCBI] 		2589653 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella michiganensis
[NCBI] 		1134687 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDK04510.1 [NCBI]
Genbank nucleotide accession
MN052874.1 [NCBI]
CDS location
range 34494 -> 36332
strand +
CDS
ATGGATTTCTTCACTCAGCCGAAAGGCTCAACCATTGGTGTGCTCAGGGATGGGCGCACCGTCCAAGAGGCGTTCGACTCGCTGATGTACACGGAGGTTACACTGAAGTCTGGGAGAGAGAACGCCGAAGCCAATAGGGTATCCCTTCAGGCTGCTGCTGACTCCACGAAGCTAATCTCAGTTCCAGCTGGTGAATACTTTGTGTCGGCACACATTACCCTTCGCACAGGAAACGTAATAGTTGGGCGAGGGGCCAATGCCTTCTCTTCAGGGTACACGCGGTTAGTATGTGAGACCACTGGGGAAGGTGTGTTCTGGTACACAGGGGACACGTCCACTGGTCAGAAGCGTATGCCCCAGATTTACAACATGGGCCTCAAGGGTGACTACCCGATTCGCTTTAACGATGAGCGTACTGCCGTCATTTCGGACCAAGCAGCGTCTAACGTGCCGTATGGTATGGTTCCTGTCGTGCAGTTCTGTACAATCGACCCACTGACTAACGGGGTGGGGATTGGCATATCGGCGTCCAAGATGTTCGACGGCGTGTTCTCTTTCAACGAAATCGCCAACTTCGACACTGGTGTCTTATTGAACGGGTGTGACCTAATGTATGTTGCGCACAACCGTATCCGCAATGCATACAAATACATGGTGCTTGAGCTGGGCGTTGGAACGTTTGGTTCCCAGAACGAGATTTACCACAACGATATCCTTCACGCCGGGTCTGCTGATTGTATCTTCATCAAGTCTACAGCTCGCCATGTGCGCATCTACGATAACTACCTAGAGCAAGCCTCCGGGACTAGCGGTCAGGCCCTCATTGGCTTCATTGATGCCTCGGTGGTTGATGCTCCTGTGTTTAATGGGAACGCGGCGCCTGTGCGTGCTTCCACCATCATAAAGGACAACCGTATAGACGGTCAGCATTTTGCGAAATACTTCGTGTATAAGTATCAGCCGTTAGGTCAGACATATGGTGTAATCGAAGACGTGTCTACCGTGGGTCCCAACACTGGACTTGGTGCTAACCACTTGGTGCTTGTGGATGCTTCCGGAGTCACTATTGACCGGGTTCCGTTCCTGTATAACTCTGTGCAGCCATGTTCATTCCGCTTCTCTGGCCCACGCTTCGGTAAGTGGAATGGTTACAACTCTGAGAGTGACTACGCTCTGAATATGACAGGCTCGAATATGTCAATGTGGGGTACATCCTTAGGTGGGAACAACCTGAAAGACTACCTGTCGGCTCGCGGAAACTCCTTGATTCTGTCTAGCGGGTTCACTGCGGCGGCTGTCTTACAGTTCCCGTCTGGTACCCTAATCAGGCCAAACTCGCAGTACGCCATTAAGGTTACCGCCAAGTGCTCTAGCGGTAGTGAGGCTCTCACATTCGCTGGGGTGGCTAATGGTACTGGGCAGACAAGCGTTACCATGCAGCTCAGTACGGAACCAGTAAGTGCTACCGCGCAATTCACCTCAGGCTCCACCCAGAGTGGCTTCTCCTTGGGCCGTTCCAACAATGGGGCGGACATTGAGATTATCGCTATAGAGTTCATTAAGTTGTACTCAGTTGAATACTCGGTGGCTTCCGGCACTGGTACGGTGACGGTGTATCGTAGTACTGGTGACATTGTTATCTCGGCGTCTGGTAACAACCAGTTCCCAGCTTACACCGTGCTGCGCTACATCGGCGGAAGCCTCAAGGAAGTGTATAAGAGCGTCACTGATTCCGCCGTTATTGACATTGCGTGGTCCGTATCTGGCCAGACCCTTACCGTGAACATTACGGGGAGTGGTGGTGGCAAGCGGTTCTCCGTCACACAGGAGGAGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a9a403696bd31d99d648a858fc63d5ff0085f13c3864512c541bb5667e10032b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6773
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genomics of Klebsiella bacteriophages in the elucidation of host range specificity Ku,H., Brown,T., Kabwe,M., Chan,H.T., Petrovski,S. and Tucci,J. 2022-11-21 — GenBank