Protein

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Genbank accession
WPK38535.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGAGILIDYNDGRPVMEITAGLRAPSFCTSFYQRCQSDKTLTINTPLTPGSDLVVVLTSPVEVMEVFDQTLVLPDPFYITSIQRNGDSGITLRGEDAYNAYSGLPSWGGVIMEVLPVGSRNAGLLVANSTDFTAISNVSRLMTCQYAQRVWVNGSMPLPVGGVPFARWDDGNVSVGFDGGSIIVRNASYGGIDDVGAAVEMDLVIFNNTPPTPGNGITMTNNQGQVTFSTVNKPFVYDRLINIGGGDQYIGNSLVQLSYTGALIENNGGYNHVRMNGIRMAGNNVRIAKNRVIGNYSRQQFQMPGKNIAVPTPLLVIPNIY
Physico‐chemical
properties
protein length:321 AA
molecular weight: 34529,80220 Da
isoelectric point:5,02828
aromaticity:0,08411
hydropathy:-0,00125

Domains

Domains [InterPro]
IPR045604
STR
4–297
IPR045604
WPK38535.1
1 321
Architecture
STR
STR 4-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK38535.1
1 321
Domain Start End Length (AA) Confidence
N-terminal 1 85 85 0,1191
Central domain 86 284 200 0,0267
C-terminal 285 321 36 0,9937
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-85
Central
86-284
C-terminal
285-321

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV129
[NCBI] 		3077274 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK38535.1 [NCBI]
Genbank nucleotide accession
OR352959 [NCBI]
CDS location
range 12205 -> 13170
strand -
CDS
ATGGGCGCTGGGATACTTATCGACTACAACGACGGGCGACCGGTTATGGAGATAACCGCTGGGCTACGCGCGCCGTCATTCTGTACATCATTCTATCAGCGCTGCCAGTCTGACAAGACGCTAACTATTAACACTCCGCTAACGCCGGGGTCAGATCTGGTCGTCGTGCTAACAAGTCCCGTTGAAGTGATGGAAGTCTTCGACCAGACACTGGTCTTGCCAGATCCGTTTTACATAACGTCAATACAGCGTAATGGGGATAGCGGAATCACCTTGCGCGGTGAGGACGCGTATAACGCATATAGCGGGCTTCCATCATGGGGCGGGGTGATTATGGAAGTGCTGCCGGTGGGATCGCGCAACGCTGGCTTACTGGTGGCGAATTCGACGGACTTCACCGCTATATCCAATGTGTCCAGGCTAATGACCTGCCAATATGCGCAGCGCGTGTGGGTGAACGGAAGTATGCCGTTACCAGTAGGCGGTGTCCCATTCGCGCGCTGGGACGACGGAAACGTGTCTGTCGGCTTCGATGGCGGAAGTATTATCGTCCGTAATGCATCCTATGGTGGGATTGACGACGTAGGCGCGGCTGTTGAAATGGACTTGGTTATATTCAACAATACGCCGCCCACCCCTGGGAACGGCATCACCATGACAAACAACCAGGGTCAGGTCACGTTCTCAACTGTGAATAAGCCGTTTGTTTATGACCGCCTTATTAATATCGGCGGCGGCGATCAGTACATCGGTAACAGCCTGGTCCAGCTTTCATACACCGGCGCGCTTATTGAGAACAACGGCGGCTATAACCACGTACGCATGAACGGTATACGAATGGCGGGCAATAATGTGCGCATAGCTAAAAACCGCGTCATTGGCAACTACTCACGGCAACAATTCCAAATGCCGGGTAAAAATATTGCAGTACCAACCCCGTTACTCGTCATTCCTAACATATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
af3d3d35c0674fb70183bf59c06ea746abf05d5dad0464aa4e36e5fb31aa5da8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7938
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank