Protein

View in Explore
Genbank accession
QBQ81047.1 [GenBank]
Protein name
putative tail collar domain protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MQLVKPLISGGATDPLSESTNAQIILDFKNGRGYYCSHPFISSLSGNAATATKLQTARTIGGVAFDGSANINLPGVNTAGNQNTTGNAATATKLQTARKIGGASFDGTADVNLPGVNIQGNQNTTGNAATATKLQTARRIANVPFDGSGDIDIPAKNVGAVERYTIQLAANGQGGWHKLATVTMPQSTSTVSIRIAGSAGFNVNNPKQASITEIVIRTSNNNPKGINSTLWRRTELDPNRIATVNTSGDIYDVYIDCGSYSNKLSAQISYSDNASVTLYTDPSRAETLPEGHVVGSVYNMYSSILPPPVAESLPVGVPLPWPTDTPPSGYIVMQGQPFDKAAYPKLAAAYPSGVLPDMRGQTIKGKPASGRDVLSTEADGVKSHTHTASTASVDLGSKTTSSFDYGTKGTSSFDYGTKTSNNTGAHTHGISGTANSAGGHQHHSSGPYANSSDSDLFPNGYTQVSVTNKPVVPRQGGAGMTRVSGKTSSDGAHTHSLSGSAASAGAHAHTVGIGAHTHSVGIGAHSHTVALGSHSHGVTVNATGNTENTVKNVAFNYIVRAA
Physico‐chemical
properties
protein length:562 AA
molecular weight: 57832,00050 Da
isoelectric point:8,92534
aromaticity:0,05694
hydropathy:-0,34057

Domains

Domains [InterPro]
IPR051934
120–562
IPR051934
SSF88874
308–438
SSF88874 SSF88874
IPR037053
311–364
IPR037053
IPR011083
316–363
IPR011083
QBQ81047.1
1 562
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_HdSG1
[NCBI] 		2508191 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ81047.1 [NCBI]
Genbank nucleotide accession
MK373795 [NCBI]
CDS location
range 29710 -> 31398
strand +
CDS
ATGCAGTTGGTCAAACCACTTATAAGTGGGGGGGCAACTGATCCTTTATCAGAAAGTACGAATGCACAGATAATTTTGGACTTTAAAAATGGACGAGGTTATTACTGTTCACATCCATTTATTTCAAGTCTTTCAGGAAATGCTGCTACAGCAACGAAATTGCAGACTGCAAGAACTATCGGCGGCGTGGCCTTCGATGGATCTGCGAACATAAATTTGCCTGGTGTAAACACGGCAGGTAATCAGAATACAACGGGCAACGCGGCTACTGCTACGAAGTTACAAACTGCGCGTAAAATTGGTGGTGCTTCATTCGACGGTACTGCTGACGTCAATCTTCCAGGTGTTAACATTCAGGGTAATCAGAACACAACTGGTAATGCGGCAACTGCTACCAAACTACAGACAGCACGTAGGATCGCTAATGTACCTTTTGATGGTAGCGGTGATATAGATATTCCTGCAAAAAACGTAGGGGCAGTTGAGAGATATACAATACAGCTGGCGGCGAACGGGCAAGGTGGTTGGCATAAACTTGCAACTGTGACAATGCCCCAGTCTACTTCTACGGTATCCATTCGAATAGCAGGTAGTGCAGGATTTAACGTAAATAATCCAAAACAAGCATCTATTACAGAGATTGTTATTCGTACAAGTAATAATAATCCTAAAGGAATTAACAGTACATTATGGCGTAGAACTGAACTAGACCCAAATCGAATCGCTACTGTCAACACATCTGGTGACATTTATGATGTCTATATAGATTGTGGATCGTATTCGAATAAGTTATCAGCTCAGATTTCTTATTCCGATAACGCTTCTGTGACACTTTATACTGATCCTTCACGAGCGGAAACTTTACCGGAAGGACACGTCGTTGGTTCAGTATATAATATGTATAGCTCTATTCTACCACCTCCTGTAGCTGAAAGTTTACCTGTAGGTGTTCCATTACCGTGGCCTACAGATACACCACCGTCCGGTTATATTGTGATGCAGGGTCAACCATTTGATAAGGCTGCATACCCGAAATTGGCTGCTGCATACCCGTCAGGCGTACTTCCAGATATGCGTGGTCAAACTATCAAAGGTAAACCAGCAAGCGGTCGTGACGTACTTTCTACAGAAGCTGATGGTGTGAAATCACATACTCACACTGCGTCTACTGCATCTGTCGATCTTGGAAGCAAGACAACTTCTAGCTTTGATTATGGTACTAAAGGGACAAGTAGTTTCGACTACGGTACTAAGACGAGTAATAATACTGGTGCGCATACACATGGTATTAGCGGAACAGCAAATAGTGCAGGTGGGCACCAACACCATAGTTCTGGACCATATGCGAATTCTAGTGATAGTGATCTCTTTCCTAACGGTTATACCCAGGTTTCAGTCACAAACAAACCAGTTGTACCACGGCAAGGTGGCGCAGGTATGACCCGTGTATCAGGGAAGACATCATCAGATGGAGCACATACCCACTCGTTATCCGGTAGTGCCGCAAGCGCAGGTGCTCACGCACACACTGTTGGTATTGGTGCTCACACACACTCAGTCGGTATTGGTGCTCATAGTCATACAGTCGCTTTAGGTTCACACAGCCACGGTGTTACAGTTAACGCAACTGGTAACACGGAAAACACCGTTAAGAACGTTGCATTCAACTATATTGTGAGGGCTGCTTAA

Tertiary structure

PDB ID
543036f91aa91524a7940db2b99966df11805e7e39ac90261e70c9e2e57e98cb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6477
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Still something new to discover - new insights into E. coli phage diversity and taxonomy Korf,I.H.E., Adriaennsens,E., Dreiseikelmann,B., Kropinski,A., Nimtz,M., Meier-Kolthoff,J.P., Rohde,M., van Raaij,M. and Wittmann,J. 2019-05-17 — GenBank