Protein

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Genbank accession
BAW19122.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIKFKTLRRGLGMNVVDIDGTLYIDGSPYNPTTLAPLGDNYRQGPSAPLPYSGTTPDGGPGWYMALPRVIYSATPNAMFIAAASDAGGGCSDYMNAGLLANGTPNYVPPQPGENFVVVAGGGGLGARNGMFKRDRATMDALASYASWTGSLDQYNAISSWLPAVSGSYINILQAMGFGSSQVTNAAADFNTANSPLMGSFSGQSHGRTITGILGSFAVLYSNKQWQTATDAATVAVINRQAKTLTTLSAAITGAASVDHCGAVPSHIINETSARGYFFVAESTAGSDNISVSTITVDTIPTTPTATLAACTYDWTGNGGVSAFPALSRAQPSARKIRASIIDRTSTTGKVYLLVTITEAPASTLEAQASHVGVLFEITSKSTLKFVQKFSIADNARAYHTMFTSDAHDRLVVRQADRIAIYKFNDATLFQKVSEYAGQFIAIGVDSQERIWMIEGSSGNQSGNGAVLYYINPENLPNSVSVTFDNSIYTFSGAAINTNAHVNIWNSSGVRIAQNLNLAITSGNATFAGGATTTSVTTSTTGDTLVPISINGIGDVVVEAST
Physico‐chemical
properties
protein length:561 AA
molecular weight: 58679,86900 Da
isoelectric point:5,81351
aromaticity:0,08734
hydropathy:0,01622

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAW19122.1
1 561
Domain Start End Length (AA) Confidence
N-terminal 1 27 27 0,8572
Central domain 28 226 200 0,6280
C-terminal 227 561 334 0,8211
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-27
Central
28-226
C-terminal
227-561

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RP12
[NCBI] 		1923889 Uroviricota > Caudoviricetes > Chimalliviridae > Ripduovirus RP12 >
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAW19122.1 [NCBI]
Genbank nucleotide accession
AP017924 [NCBI]
CDS location
range 144252 -> 145937
strand -
CDS
ATGATTAAGTTCAAAACCCTGCGTCGTGGTTTGGGGATGAACGTCGTCGACATTGACGGCACTCTCTATATCGACGGTTCCCCGTATAACCCCACCACGCTGGCTCCGCTTGGCGACAACTATCGCCAAGGTCCGAGCGCGCCATTACCTTATTCTGGCACTACTCCTGACGGTGGTCCAGGCTGGTACATGGCGCTTCCTCGCGTCATCTATTCGGCTACACCGAACGCCATGTTTATAGCTGCGGCTAGCGATGCTGGCGGCGGTTGCTCCGATTACATGAATGCTGGCCTGCTGGCCAACGGCACTCCCAATTACGTCCCGCCGCAACCCGGCGAGAATTTCGTTGTGGTGGCTGGTGGTGGCGGGTTGGGTGCGCGTAACGGCATGTTCAAGCGCGATCGCGCTACCATGGATGCGCTGGCTTCTTATGCTAGCTGGACTGGCTCCCTGGATCAGTACAACGCGATCTCATCTTGGCTGCCAGCAGTCTCCGGCTCTTACATCAACATCCTGCAAGCGATGGGTTTTGGTTCGAGCCAAGTTACGAATGCAGCTGCTGACTTCAATACAGCAAACTCTCCACTGATGGGTTCGTTCTCCGGGCAGTCCCACGGTCGGACAATCACTGGTATTCTGGGCAGCTTCGCTGTTCTTTACAGTAACAAACAGTGGCAAACAGCTACTGACGCCGCTACTGTTGCCGTGATTAACCGTCAAGCAAAAACGCTGACGACTCTGAGTGCTGCTATCACCGGCGCTGCGAGCGTTGACCACTGCGGTGCGGTTCCGTCGCACATCATCAACGAGACTTCGGCGCGCGGTTATTTCTTCGTAGCTGAGTCGACTGCTGGTTCTGACAATATTTCGGTGTCGACCATTACTGTCGATACCATACCGACCACGCCGACCGCTACGCTGGCGGCCTGCACTTACGACTGGACTGGCAATGGTGGCGTGTCCGCATTCCCAGCACTGAGTCGCGCTCAGCCGAGCGCACGCAAGATCCGCGCATCCATCATCGATCGTACTTCGACTACAGGCAAGGTTTATCTGCTTGTGACGATCACGGAAGCGCCAGCCAGTACCCTGGAAGCCCAGGCTTCCCACGTCGGCGTTCTGTTCGAAATCACCAGCAAGAGCACGCTGAAATTCGTTCAGAAATTCAGCATTGCTGATAATGCTCGTGCTTACCACACCATGTTCACGTCTGACGCGCACGATCGTCTGGTGGTGCGTCAGGCTGACCGTATCGCGATCTACAAGTTCAATGATGCCACGCTCTTCCAAAAGGTGAGCGAGTATGCTGGTCAGTTCATTGCGATTGGCGTTGACTCGCAAGAACGGATCTGGATGATCGAAGGCAGTAGCGGTAACCAGTCTGGTAATGGTGCAGTGCTGTATTACATCAACCCGGAAAACCTGCCGAACAGTGTATCTGTGACGTTCGACAATTCGATCTACACCTTTAGTGGTGCTGCGATCAATACGAACGCTCACGTGAACATCTGGAACTCGTCCGGCGTGCGCATCGCTCAGAACCTGAATCTGGCCATCACCAGTGGTAACGCTACCTTCGCGGGTGGCGCAACGACCACTTCGGTAACGACCAGCACGACTGGCGATACGCTCGTTCCGATCAGTATCAATGGCATCGGCGACGTTGTTGTGGAGGCATCGACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4932b8f0e782528473d0e53cc8a9a2a1ee007d2b7ed2b3246c54742e0d567b51
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5176
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of two jumbo phages RP12 and RP31 infecting the phytopathogen Ralstonia solanacearum Kawasaki,T., Yoshikawa,G., Ogata,H. and Yamada,T. 2020 — GenBank