Protein

View in Explore
Genbank accession
QCW19421.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,50
Protein sequence
MGYETTSRTDMHFGIKTNSADVIDRNGKYLLNNYTTSPEIKVTPEVDYIELGAWDSAMSITEYSTILLPQDVNGGTHLKVNYKTNNPITLFRHKNHGTESERYNWYLVYSGFEDYRVTLPTTVGGTYDINAGFKSFHVNVPLNNISNQYYVGVDDSLRLAVQRVGTSSGSHNVGLCTTAKSWGVQFTTNMTGAQSIYKGGNLLTTATAVDWPLGSAIASTNNFVAELFVNHSQNSNDKQYRRYRFLGERTVANSIVMKVECWIWPDMYSQ
Physico‐chemical
properties
protein length:270 AA
molecular weight: 30329,43340 Da
isoelectric point:6,37463
aromaticity:0,11852
hydropathy:-0,41630

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCW19421.1
1 270
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0012
Central domain 11 209 200 0,0507
C-terminal 210 270 60 0,9948
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-270

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Va_90-11-287_p41
[NCBI] 		2565520 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio anguillarum
[NCBI] 		55601 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCW19421.1 [NCBI]
Genbank nucleotide accession
MK672799 [NCBI]
CDS location
range 18384 -> 19196
strand -
CDS
ATGGGCTACGAAACAACATCCAGAACGGATATGCATTTTGGTATAAAAACCAATAGCGCCGACGTTATAGACAGGAACGGTAAATACTTACTTAACAACTACACGACTTCCCCTGAAATCAAGGTCACGCCTGAGGTTGACTATATAGAGCTTGGCGCTTGGGATTCGGCAATGAGCATCACCGAATACAGCACCATCCTGCTTCCTCAGGATGTCAATGGTGGCACTCATCTAAAGGTCAACTACAAAACGAACAATCCCATTACTTTGTTTAGACACAAGAATCACGGCACCGAATCGGAGCGGTACAATTGGTATCTGGTCTATAGTGGATTCGAAGATTATCGTGTCACCCTACCAACTACAGTAGGCGGCACTTACGATATAAACGCTGGGTTCAAGTCGTTCCATGTAAATGTGCCACTCAATAACATAAGCAACCAATACTATGTTGGAGTTGATGATAGCTTGAGATTGGCAGTTCAAAGAGTTGGCACCTCCTCTGGGTCGCATAATGTTGGGTTGTGTACAACAGCTAAATCTTGGGGTGTGCAATTCACAACAAATATGACAGGGGCACAGAGCATATACAAAGGCGGTAATTTACTCACAACAGCAACGGCAGTAGACTGGCCTTTGGGGTCAGCGATTGCTTCTACTAACAACTTTGTGGCAGAGCTCTTTGTTAATCACTCGCAAAATAGTAACGATAAGCAATATAGACGTTACCGCTTCTTGGGGGAGCGCACAGTGGCTAACTCCATAGTAATGAAAGTGGAGTGCTGGATATGGCCTGACATGTATAGCCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1e2b9825616d0192fc2d87e0e1fb4aad3cbbadd08b0625cb053e7fdce3953f99
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2726
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Large phenotypic and genetic diversity of prophages induced from the fish pathogen Vibrio anguillarum Andersen,N., Castillo,D., Kalatzis,P. and Middelboe,M. 2019 31653117 GenBank