Protein

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Genbank accession
AGO49697.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MKHTISIVLFFILSLGLNAQTVEGTVGSDGSLIPYNVSASADVQDGTITKAKLDASLAAEIDSKTNYSEVLNLHRTSDPTSNVKESNIINAWVKATLVDLESVSTDSYIGDLSLKATKNASGSGVIYSPNYSVEIGKEYVFSCRIKVGGGFITGSNLYLADKSGAFTQTPIDHTNSDWQLVTVTLGFTKTRTRVNFSMSAQPSGAFMLIDDMKLYENEESIKAFPNAYGFGAVSTGGRGGTVRKVTNLNDSGSGSLREAAGIANTYVVFDVAGNIELSSPISVADNVTIFGQTAFRNGGQGITLKANSTNESSLMTVSGKENFTVQYIRFRRGVTPFATASTGGQNLALANAANKAIIDHCSFGWDEDESLTIWDAQQVTVSNSIINHSLKVNAYGRVKTGKGVIIGNNAEEVSLYCNLIGNADQRNALFGGSTPPLGNFEFKNNLIHNWGTAGTYFTEGTNDFKVNIIGNKWKLGNNSILNRHALQATGNTGDLFYLEGNISAERPTDDLDEWLAIGDTATPSINLSTSFQQLTPFDYPLQDSPTYTIDELESTVIKQMGVSLYEDKPDYGAKQDYLNGTGSHINIPSDDGGYPVLSNFTTSIVDSNSDGIEDSFATTHGITSPNQIIGSYDFGDWIFDNSIGYEAIEVYAYWLTKQ
Physico‐chemical
properties
protein length:658 AA
molecular weight: 70865,57370 Da
isoelectric point:4,69140
aromaticity:0,09574
hydropathy:-0,22280

Domains

Domains [InterPro]
G3DSA:2.60.120.260
STR
80–212
G3DSA:2.60.120.260 IPR012334
G3DSA:2.60.120.260
STR
80–200
G3DSA:2.60.120.260 IPR012334
IPR008979
STR
86–217
IPR008979 IPR011050
IPR052063
Unmapped
216–655
IPR052063
AGO49697.1
1 658
Architecture
STR
STR 80-548 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGO49697.1
1 658
Domain Start End Length (AA) Confidence
N-terminal 1 254 254 0,1605
Central domain 255 502 249 0,9127
C-terminal 503 658 155 0,6074
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-254
Central
255-502
C-terminal
503-658

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phi13:2
[NCBI] 		1328030 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota
Host Cellulophaga baltica 13
[NCBI] 		1348583 Bacteria > Bacteroidetes > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGO49697.1 [NCBI]
Genbank nucleotide accession
KC821633 [NCBI]
CDS location
range 35867 -> 37843
strand +
CDS
ATGAAACACACAATTAGCATAGTATTATTTTTCATCCTTTCACTGGGATTAAACGCTCAAACGGTTGAGGGTACTGTAGGTAGTGATGGTAGTTTAATTCCTTATAATGTTTCCGCTAGTGCGGATGTGCAAGACGGAACTATAACAAAGGCTAAATTAGATGCTAGTTTAGCTGCTGAAATTGACTCTAAAACAAATTATAGTGAGGTTTTAAATTTACATAGAACGTCAGACCCTACTAGCAATGTAAAAGAATCAAATATCATTAATGCATGGGTTAAAGCTACTTTGGTAGATTTAGAATCCGTATCGACTGATAGCTATATTGGTGATTTGTCTCTAAAAGCAACTAAGAATGCTTCTGGATCGGGTGTTATTTATTCGCCTAATTATTCTGTAGAAATAGGTAAAGAATATGTTTTTAGCTGTAGAATTAAAGTAGGAGGTGGATTTATAACTGGTAGTAATTTATACTTAGCTGATAAGTCCGGAGCGTTCACACAAACACCTATAGACCACACTAATTCAGATTGGCAATTAGTAACGGTAACACTTGGATTCACTAAAACAAGAACTAGAGTTAATTTCTCAATGTCAGCACAACCATCAGGAGCTTTTATGCTTATTGATGACATGAAGCTTTACGAGAATGAAGAATCTATAAAGGCGTTTCCTAACGCTTACGGTTTTGGCGCAGTATCTACAGGGGGAAGAGGTGGAACAGTTAGAAAGGTGACAAACTTAAACGATAGTGGTTCAGGAAGCTTAAGAGAAGCGGCTGGAATAGCTAATACATATGTAGTTTTTGATGTTGCAGGAAACATAGAGTTGAGCAGTCCTATTTCTGTAGCTGACAATGTGACTATTTTTGGTCAAACAGCATTTAGAAATGGAGGGCAAGGAATAACATTAAAAGCAAACTCTACAAACGAATCTAGTTTAATGACTGTAAGCGGAAAGGAAAACTTTACAGTTCAATACATAAGATTTAGAAGAGGTGTAACTCCTTTTGCTACGGCTTCTACAGGAGGTCAAAACTTAGCCTTAGCTAATGCAGCGAACAAAGCAATAATTGACCATTGCTCTTTTGGTTGGGATGAAGACGAAAGTTTAACTATTTGGGATGCGCAACAAGTTACAGTTTCAAATTCAATAATCAACCACTCTTTAAAAGTAAATGCCTATGGTCGTGTAAAAACAGGCAAGGGAGTTATTATTGGAAACAATGCAGAAGAGGTTTCATTGTATTGTAATTTAATAGGCAATGCAGACCAAAGAAACGCATTATTTGGTGGTTCCACACCGCCACTAGGAAACTTTGAGTTTAAAAATAACTTAATACATAATTGGGGTACAGCAGGAACATACTTTACGGAGGGAACAAATGACTTTAAAGTTAATATTATTGGAAACAAATGGAAGCTTGGAAATAACTCTATACTAAATAGACACGCTTTACAGGCTACTGGTAATACTGGAGATTTGTTTTACCTAGAAGGTAACATTTCAGCGGAAAGACCTACAGACGATTTAGACGAATGGTTAGCTATAGGAGACACAGCAACGCCTTCTATTAACCTATCTACTTCATTTCAACAGTTAACACCTTTTGACTACCCTTTACAGGATTCTCCTACATATACTATAGATGAATTAGAAAGTACAGTTATAAAACAAATGGGGGTTAGTTTGTATGAAGATAAACCAGACTATGGAGCTAAACAAGATTACTTAAACGGAACAGGTTCGCATATAAATATACCTAGTGACGATGGTGGTTATCCTGTTTTAAGTAACTTTACAACATCAATAGTAGATTCTAATAGCGACGGCATAGAAGATAGTTTTGCAACTACTCATGGAATAACATCGCCAAATCAAATAATAGGCTCTTACGACTTTGGAGATTGGATATTTGACAACTCTATAGGGTACGAAGCAATAGAGGTTTACGCTTACTGGTTAACAAAACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c089b07eebfc9493f11de719d085afc4eb17cfdbe1bfd4065d9b908cd44af436
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7816
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50