Protein

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Genbank accession
AGO49697.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MKHTISIVLFFILSLGLNAQTVEGTVGSDGSLIPYNVSASADVQDGTITKAKLDASLAAEIDSKTNYSEVLNLHRTSDPTSNVKESNIINAWVKATLVDLESVSTDSYIGDLSLKATKNASGSGVIYSPNYSVEIGKEYVFSCRIKVGGGFITGSNLYLADKSGAFTQTPIDHTNSDWQLVTVTLGFTKTRTRVNFSMSAQPSGAFMLIDDMKLYENEESIKAFPNAYGFGAVSTGGRGGTVRKVTNLNDSGSGSLREAAGIANTYVVFDVAGNIELSSPISVADNVTIFGQTAFRNGGQGITLKANSTNESSLMTVSGKENFTVQYIRFRRGVTPFATASTGGQNLALANAANKAIIDHCSFGWDEDESLTIWDAQQVTVSNSIINHSLKVNAYGRVKTGKGVIIGNNAEEVSLYCNLIGNADQRNALFGGSTPPLGNFEFKNNLIHNWGTAGTYFTEGTNDFKVNIIGNKWKLGNNSILNRHALQATGNTGDLFYLEGNISAERPTDDLDEWLAIGDTATPSINLSTSFQQLTPFDYPLQDSPTYTIDELESTVIKQMGVSLYEDKPDYGAKQDYLNGTGSHINIPSDDGGYPVLSNFTTSIVDSNSDGIEDSFATTHGITSPNQIIGSYDFGDWIFDNSIGYEAIEVYAYWLTKQ
Physico‐chemical
properties
protein length:658 AA
molecular weight: 70865,57370 Da
isoelectric point:4,69140
aromaticity:0,09574
hydropathy:-0,22280

Domains

Domains [InterPro]
G3DSA:2.60.120.260
80–212
G3DSA:2.60.120.260 IPR012334
IPR008979
86–217
IPR008979 IPR011050
IPR052063
216–655
IPR052063
AGO49697.1
1 658
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phi13:2
[NCBI] 		1328030 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga baltica
[NCBI] 		76594 Bacteria > Bacteroidetes > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga
Host Cellulophaga baltica 13
[NCBI] 		1348583 Bacteria > Bacteroidetes > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGO49697.1 [NCBI]
Genbank nucleotide accession
KC821633 [NCBI]
CDS location
range 35867 -> 37843
strand +
CDS
ATGAAACACACAATTAGCATAGTATTATTTTTCATCCTTTCACTGGGATTAAACGCTCAAACGGTTGAGGGTACTGTAGGTAGTGATGGTAGTTTAATTCCTTATAATGTTTCCGCTAGTGCGGATGTGCAAGACGGAACTATAACAAAGGCTAAATTAGATGCTAGTTTAGCTGCTGAAATTGACTCTAAAACAAATTATAGTGAGGTTTTAAATTTACATAGAACGTCAGACCCTACTAGCAATGTAAAAGAATCAAATATCATTAATGCATGGGTTAAAGCTACTTTGGTAGATTTAGAATCCGTATCGACTGATAGCTATATTGGTGATTTGTCTCTAAAAGCAACTAAGAATGCTTCTGGATCGGGTGTTATTTATTCGCCTAATTATTCTGTAGAAATAGGTAAAGAATATGTTTTTAGCTGTAGAATTAAAGTAGGAGGTGGATTTATAACTGGTAGTAATTTATACTTAGCTGATAAGTCCGGAGCGTTCACACAAACACCTATAGACCACACTAATTCAGATTGGCAATTAGTAACGGTAACACTTGGATTCACTAAAACAAGAACTAGAGTTAATTTCTCAATGTCAGCACAACCATCAGGAGCTTTTATGCTTATTGATGACATGAAGCTTTACGAGAATGAAGAATCTATAAAGGCGTTTCCTAACGCTTACGGTTTTGGCGCAGTATCTACAGGGGGAAGAGGTGGAACAGTTAGAAAGGTGACAAACTTAAACGATAGTGGTTCAGGAAGCTTAAGAGAAGCGGCTGGAATAGCTAATACATATGTAGTTTTTGATGTTGCAGGAAACATAGAGTTGAGCAGTCCTATTTCTGTAGCTGACAATGTGACTATTTTTGGTCAAACAGCATTTAGAAATGGAGGGCAAGGAATAACATTAAAAGCAAACTCTACAAACGAATCTAGTTTAATGACTGTAAGCGGAAAGGAAAACTTTACAGTTCAATACATAAGATTTAGAAGAGGTGTAACTCCTTTTGCTACGGCTTCTACAGGAGGTCAAAACTTAGCCTTAGCTAATGCAGCGAACAAAGCAATAATTGACCATTGCTCTTTTGGTTGGGATGAAGACGAAAGTTTAACTATTTGGGATGCGCAACAAGTTACAGTTTCAAATTCAATAATCAACCACTCTTTAAAAGTAAATGCCTATGGTCGTGTAAAAACAGGCAAGGGAGTTATTATTGGAAACAATGCAGAAGAGGTTTCATTGTATTGTAATTTAATAGGCAATGCAGACCAAAGAAACGCATTATTTGGTGGTTCCACACCGCCACTAGGAAACTTTGAGTTTAAAAATAACTTAATACATAATTGGGGTACAGCAGGAACATACTTTACGGAGGGAACAAATGACTTTAAAGTTAATATTATTGGAAACAAATGGAAGCTTGGAAATAACTCTATACTAAATAGACACGCTTTACAGGCTACTGGTAATACTGGAGATTTGTTTTACCTAGAAGGTAACATTTCAGCGGAAAGACCTACAGACGATTTAGACGAATGGTTAGCTATAGGAGACACAGCAACGCCTTCTATTAACCTATCTACTTCATTTCAACAGTTAACACCTTTTGACTACCCTTTACAGGATTCTCCTACATATACTATAGATGAATTAGAAAGTACAGTTATAAAACAAATGGGGGTTAGTTTGTATGAAGATAAACCAGACTATGGAGCTAAACAAGATTACTTAAACGGAACAGGTTCGCATATAAATATACCTAGTGACGATGGTGGTTATCCTGTTTTAAGTAACTTTACAACATCAATAGTAGATTCTAATAGCGACGGCATAGAAGATAGTTTTGCAACTACTCATGGAATAACATCGCCAAATCAAATAATAGGCTCTTACGACTTTGGAGATTGGATATTTGACAACTCTATAGGGTACGAAGCAATAGAGGTTTACGCTTACTGGTTAACAAAACAATAA

Tertiary structure

PDB ID
c089b07eebfc9493f11de719d085afc4eb17cfdbe1bfd4065d9b908cd44af436
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7816
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50