Protein

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Genbank accession
YP_009792864.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALYRRGNGSMDADGTVHGTDTKSIDLLALIRVGATIVFLEQPIKLAVISDIVSDTELKAISTDGQTAADGKYVNQPNDSLTGNGLALNDAVKLRYYQSKETEIAAAKDLINQLDMNKLEQIVADVNQAKSDSQAAQNQAELARDAANAARDETNSIKNQTQQIVDGAVGSINAAKDQAITDVLPIVTSSITHIDSEEAEVNRGINDAKGDLSGYVNDAQTAAQTATSAKNDAQAARDDAVSSKDAAAVSAQEAKDAANSINAENLLTKDGNLAGLEDKKESRKNIGLGENDAVNFLTINTTGAIGAGRNSWDGSSWGSQSILSSLMIMSPDGISTPGIYVRKERSDNGYAGTLLFYEGANYFETNNRFRANQFLCQKTSMGYNQMWSASCFQGNSYTADSGAENYQSLVAGSCDIRGQGYVGGVAFGMMTTGNAEWPRAQISVGTQDRDVAGNIGLQMHFRFMASGQISYAGPQGAGSFQQVPASDKIKTLSIKDDELNTGFINIKSMRFRNFIFNDDEQERVRRGVIAQEIEEIDNLYVKRKVYVSHEQIARKDARLELDTTPLLLDTMRALQDTIKIVEELQEEIKMLKSK
Physico‐chemical
properties
protein length:594 AA
molecular weight: 64225,55510 Da
isoelectric point:4,79757
aromaticity:0,05892
hydropathy:-0,43182

Domains

Domains [InterPro]
DC_1541
STR
75–558
DC_1541 Coil
Coil
Unmapped
97–117
Coil Coil DC_0312
YP_009792864.1
1 594
Architecture
STR
RBD
STR 75-558 | RBD 559-594
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009792864.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 282 282 0,9938
Central domain 283 481 200 0,0719
C-terminal 482 594 112 0,9990
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-282
Central
283-481
C-terminal
482-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage vB_SflS-ISF001
[NCBI] 		2048005 Uroviricota > Caudoviricetes > Drexlerviridae > Tunavirus > Tunavirus ISF001
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009792864.1 [NCBI]
Genbank nucleotide accession
NC_047863 [NCBI]
CDS location
range 9598 -> 11382
strand +
CDS
ATGGCTTTATATAGACGCGGCAATGGATCAATGGATGCAGACGGCACGGTTCACGGAACCGATACAAAATCGATAGATCTACTTGCTCTGATTCGAGTCGGTGCAACTATCGTATTCCTGGAGCAACCAATTAAGCTGGCGGTGATTAGCGATATCGTTAGCGACACAGAGTTAAAGGCTATCTCTACGGATGGTCAGACTGCCGCTGACGGTAAGTATGTGAACCAGCCTAACGATTCGTTGACTGGTAACGGATTAGCTCTAAACGATGCTGTGAAGCTTCGATACTATCAAAGCAAAGAGACTGAGATCGCGGCAGCTAAAGATCTGATAAATCAGCTTGATATGAATAAACTTGAGCAAATAGTTGCTGATGTGAATCAGGCGAAATCTGATTCTCAAGCTGCGCAAAATCAGGCTGAATTAGCGCGTGACGCAGCCAACGCTGCACGCGATGAAACTAACTCAATCAAGAATCAGACGCAACAGATTGTTGACGGTGCTGTCGGTAGCATCAATGCGGCTAAGGATCAGGCTATAACCGATGTGCTGCCAATAGTAACTTCATCCATCACTCACATTGACTCAGAAGAAGCGGAGGTGAATCGGGGAATTAATGACGCAAAAGGCGATCTGTCAGGTTACGTTAATGACGCTCAGACGGCAGCACAAACGGCGACCTCTGCAAAAAACGACGCTCAGGCAGCGCGTGACGATGCGGTAAGCTCAAAAGATGCGGCTGCGGTAAGTGCTCAAGAAGCAAAAGACGCAGCTAACAGCATCAATGCTGAAAATCTTTTAACTAAGGATGGCAATCTAGCTGGTCTTGAGGATAAAAAAGAGTCAAGAAAAAATATTGGGTTAGGTGAAAATGATGCTGTTAACTTTCTTACTATTAACACCACTGGCGCTATAGGTGCAGGAAGGAATTCATGGGACGGTTCTAGCTGGGGTAGTCAGTCCATATTGTCATCATTGATGATTATGTCACCTGATGGAATATCTACGCCAGGTATTTACGTCAGAAAAGAACGTAGCGATAATGGTTATGCTGGGACTTTATTATTTTATGAAGGGGCAAACTACTTCGAGACTAACAATAGATTTAGAGCCAATCAGTTTTTATGCCAGAAAACATCTATGGGTTACAACCAGATGTGGTCTGCTTCATGCTTCCAGGGTAATTCTTACACCGCCGATAGTGGCGCTGAAAACTATCAATCACTTGTTGCTGGATCGTGTGATATAAGGGGGCAAGGGTATGTTGGCGGCGTAGCATTTGGCATGATGACTACGGGTAATGCTGAATGGCCCAGAGCACAAATATCAGTAGGCACTCAAGATAGGGATGTAGCAGGCAATATTGGTCTGCAAATGCATTTCAGGTTTATGGCTTCAGGGCAAATATCTTACGCTGGACCGCAAGGGGCTGGAAGTTTCCAACAGGTTCCGGCATCTGACAAAATTAAAACGCTCAGCATAAAGGATGATGAATTAAACACCGGATTCATCAACATAAAGTCAATGAGATTTAGGAACTTTATATTTAACGACGATGAGCAAGAAAGGGTAAGGCGAGGTGTTATAGCTCAGGAGATAGAAGAGATCGACAATCTATATGTTAAGAGAAAGGTGTATGTGAGCCACGAGCAAATCGCGCGAAAAGATGCAAGACTTGAGCTTGATACAACTCCTTTATTGCTTGACACTATGAGAGCTTTACAGGATACAATAAAGATAGTTGAAGAGTTACAAGAAGAGATAAAAATGTTGAAGTCCAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2835fea32abec6a21cfd1a9ad51892687c5a9d122b9057a334c36638e024446c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6528
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genomic analysis of a novel S. flexneri bacteriophage vB_SflS-ISF001 Shahin,K., Bouzari,M. and Wang,R. 2019-04-05 — GenBank