Protein

View in Explore
Genbank accession
YP_009792864.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALYRRGNGSMDADGTVHGTDTKSIDLLALIRVGATIVFLEQPIKLAVISDIVSDTELKAISTDGQTAADGKYVNQPNDSLTGNGLALNDAVKLRYYQSKETEIAAAKDLINQLDMNKLEQIVADVNQAKSDSQAAQNQAELARDAANAARDETNSIKNQTQQIVDGAVGSINAAKDQAITDVLPIVTSSITHIDSEEAEVNRGINDAKGDLSGYVNDAQTAAQTATSAKNDAQAARDDAVSSKDAAAVSAQEAKDAANSINAENLLTKDGNLAGLEDKKESRKNIGLGENDAVNFLTINTTGAIGAGRNSWDGSSWGSQSILSSLMIMSPDGISTPGIYVRKERSDNGYAGTLLFYEGANYFETNNRFRANQFLCQKTSMGYNQMWSASCFQGNSYTADSGAENYQSLVAGSCDIRGQGYVGGVAFGMMTTGNAEWPRAQISVGTQDRDVAGNIGLQMHFRFMASGQISYAGPQGAGSFQQVPASDKIKTLSIKDDELNTGFINIKSMRFRNFIFNDDEQERVRRGVIAQEIEEIDNLYVKRKVYVSHEQIARKDARLELDTTPLLLDTMRALQDTIKIVEELQEEIKMLKSK
Physico‐chemical
properties
protein length:594 AA
molecular weight: 64225,55510 Da
isoelectric point:4,79757
aromaticity:0,05892
hydropathy:-0,43182

Domains

Domains [InterPro]
Coil
97–117
Coil Coil Coil
YP_009792864.1
1 594
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage vB_SflS-ISF001
[NCBI] 		2048005 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009792864.1 [NCBI]
Genbank nucleotide accession
NC_047863 [NCBI]
CDS location
range 9598 -> 11382
strand +
CDS
ATGGCTTTATATAGACGCGGCAATGGATCAATGGATGCAGACGGCACGGTTCACGGAACCGATACAAAATCGATAGATCTACTTGCTCTGATTCGAGTCGGTGCAACTATCGTATTCCTGGAGCAACCAATTAAGCTGGCGGTGATTAGCGATATCGTTAGCGACACAGAGTTAAAGGCTATCTCTACGGATGGTCAGACTGCCGCTGACGGTAAGTATGTGAACCAGCCTAACGATTCGTTGACTGGTAACGGATTAGCTCTAAACGATGCTGTGAAGCTTCGATACTATCAAAGCAAAGAGACTGAGATCGCGGCAGCTAAAGATCTGATAAATCAGCTTGATATGAATAAACTTGAGCAAATAGTTGCTGATGTGAATCAGGCGAAATCTGATTCTCAAGCTGCGCAAAATCAGGCTGAATTAGCGCGTGACGCAGCCAACGCTGCACGCGATGAAACTAACTCAATCAAGAATCAGACGCAACAGATTGTTGACGGTGCTGTCGGTAGCATCAATGCGGCTAAGGATCAGGCTATAACCGATGTGCTGCCAATAGTAACTTCATCCATCACTCACATTGACTCAGAAGAAGCGGAGGTGAATCGGGGAATTAATGACGCAAAAGGCGATCTGTCAGGTTACGTTAATGACGCTCAGACGGCAGCACAAACGGCGACCTCTGCAAAAAACGACGCTCAGGCAGCGCGTGACGATGCGGTAAGCTCAAAAGATGCGGCTGCGGTAAGTGCTCAAGAAGCAAAAGACGCAGCTAACAGCATCAATGCTGAAAATCTTTTAACTAAGGATGGCAATCTAGCTGGTCTTGAGGATAAAAAAGAGTCAAGAAAAAATATTGGGTTAGGTGAAAATGATGCTGTTAACTTTCTTACTATTAACACCACTGGCGCTATAGGTGCAGGAAGGAATTCATGGGACGGTTCTAGCTGGGGTAGTCAGTCCATATTGTCATCATTGATGATTATGTCACCTGATGGAATATCTACGCCAGGTATTTACGTCAGAAAAGAACGTAGCGATAATGGTTATGCTGGGACTTTATTATTTTATGAAGGGGCAAACTACTTCGAGACTAACAATAGATTTAGAGCCAATCAGTTTTTATGCCAGAAAACATCTATGGGTTACAACCAGATGTGGTCTGCTTCATGCTTCCAGGGTAATTCTTACACCGCCGATAGTGGCGCTGAAAACTATCAATCACTTGTTGCTGGATCGTGTGATATAAGGGGGCAAGGGTATGTTGGCGGCGTAGCATTTGGCATGATGACTACGGGTAATGCTGAATGGCCCAGAGCACAAATATCAGTAGGCACTCAAGATAGGGATGTAGCAGGCAATATTGGTCTGCAAATGCATTTCAGGTTTATGGCTTCAGGGCAAATATCTTACGCTGGACCGCAAGGGGCTGGAAGTTTCCAACAGGTTCCGGCATCTGACAAAATTAAAACGCTCAGCATAAAGGATGATGAATTAAACACCGGATTCATCAACATAAAGTCAATGAGATTTAGGAACTTTATATTTAACGACGATGAGCAAGAAAGGGTAAGGCGAGGTGTTATAGCTCAGGAGATAGAAGAGATCGACAATCTATATGTTAAGAGAAAGGTGTATGTGAGCCACGAGCAAATCGCGCGAAAAGATGCAAGACTTGAGCTTGATACAACTCCTTTATTGCTTGACACTATGAGAGCTTTACAGGATACAATAAAGATAGTTGAAGAGTTACAAGAAGAGATAAAAATGTTGAAGTCCAAATGA

Tertiary structure

PDB ID
2835fea32abec6a21cfd1a9ad51892687c5a9d122b9057a334c36638e024446c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6528
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genomic analysis of a novel S. flexneri bacteriophage vB_SflS-ISF001 Shahin,K., Bouzari,M. and Wang,R. 2019-04-05 — GenBank