Protein

View in Explore
Genbank accession
QBX25806.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MADYTSNVSNGYSLLLKVEETKVDKIKNESTIHVALSLRNGYNIFSDWDCRTNLTVAGRTFTNNKRMALMSYNSSLLLIDQTFTVPHNNDGNKIIDISASFSILGSQYYLPNATLSITGKEQRLTYIPRASTGKVTGDTIGSPVTISINRASEDFKHNVSWEFGTLSGPIAENIDTSATWIPSISRLAPEIPNSDTGRGIIKIETFYDDIKTGEDSITITLSLPDSVVPTLGSLSLSDSNQTAQQALSGNYFAALKSNPKVSFNYASGIYGSTIQSYRAEVFKYDSGQWIQLTNNTTDNNGPLGTINWIGKAKVVGYCIDSRGRKSPSKEVIVTMLEYFNPILSFSAFRAGGALNQINVVRKFKVAPLMINGVAKNKVIMRWNIINNTTGTVFNNIGGSANWNASTVFERMDWMATLSGTYPSNNTFTVEGYIADIFGEIKEPFKYVVGPEIIPLSLSPNGIGVGKEWVRGTVDVNGDGYFSGKVVSGDLEITKIALLNLFYPVGSIYISISSSNPSYTMGGTWQRFANGKTLVGVDEYDTDFNSPNRTGGEKAHQTTVEEMPSHAHQFNTEAAGSPIALGWENGNNSAMRAKLGNYTMGLPTTSVGGNKPHNNLQPYTTVYIWRRTA
Physico‐chemical
properties
protein length:628 AA
molecular weight: 68592,22360 Da
isoelectric point:7,06238
aromaticity:0,09873
hydropathy:-0,25350

Domains

Domains [InterPro]
IPR008577
STR
1–556
IPR008577
IPR008577
STR
1–565
IPR008577
SSF88874
STR
537–622
SSF88874
QBX25806.1
1 628
Architecture
STR
STR 1-622 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX25806.1
1 628
Domain Start End Length (AA) Confidence
N-terminal 1 159 159 0,1866
Central domain 160 359 201 0,5178
C-terminal 360 628 268 0,7042
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-159
Central
160-359
C-terminal
360-628

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan274
[NCBI] 		2548089 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus iniae
[NCBI] 		1346 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX25806.1 [NCBI]
Genbank nucleotide accession
MK448895 [NCBI]
CDS location
range 28661 -> 30547
strand +
CDS
ATGGCAGACTATACATCTAATGTCAGCAATGGTTATAGCTTACTATTAAAAGTTGAAGAAACTAAGGTTGATAAAATAAAAAATGAATCAACTATTCATGTTGCTTTGTCTTTACGTAATGGATATAACATTTTTTCCGATTGGGATTGCCGAACAAACTTGACGGTAGCAGGACGAACATTTACTAATAATAAGAGAATGGCTTTAATGAGTTATAACTCGTCATTATTATTAATTGATCAAACTTTTACTGTACCTCATAACAATGATGGAAATAAAATCATTGACATTTCAGCAAGTTTCTCAATTCTAGGATCACAATATTATTTGCCAAATGCCACTCTTAGCATAACTGGTAAAGAACAACGATTGACATATATACCCAGAGCATCAACAGGGAAAGTAACTGGAGATACCATTGGTTCACCAGTTACTATCTCAATCAATCGTGCCTCAGAAGACTTTAAGCATAATGTCAGTTGGGAGTTCGGAACTTTATCAGGACCGATTGCTGAAAATATTGATACTTCAGCGACTTGGATTCCTAGTATCTCACGATTAGCTCCTGAGATTCCAAATTCTGATACAGGACGTGGAATAATTAAAATTGAAACTTTTTACGATGATATTAAAACCGGTGAAGATAGTATTACTATAACGTTAAGTTTACCAGATTCTGTTGTACCTACACTTGGCAGCTTGTCTTTGTCAGACAGTAACCAAACAGCTCAACAAGCACTATCTGGAAATTATTTTGCTGCGTTAAAATCTAACCCGAAAGTTAGCTTTAATTATGCTAGCGGTATTTATGGATCTACCATACAGTCTTATCGGGCAGAAGTTTTTAAGTATGATTCTGGTCAATGGATTCAGTTGACCAACAACACAACAGACAATAACGGTCCCTTAGGAACTATAAATTGGATTGGTAAAGCTAAAGTTGTCGGATACTGTATTGACTCAAGAGGAAGAAAAAGTCCCTCAAAAGAAGTTATCGTAACAATGTTAGAATACTTCAATCCAATCCTATCTTTTTCTGCTTTTAGAGCAGGTGGTGCATTGAATCAAATCAATGTTGTTAGAAAATTTAAAGTAGCTCCTCTGATGATCAATGGGGTAGCTAAAAATAAAGTTATTATGCGGTGGAATATCATCAATAACACAACAGGGACTGTCTTCAATAATATTGGTGGTTCTGCTAATTGGAATGCTAGTACAGTATTTGAACGAATGGATTGGATGGCAACACTAAGTGGAACTTATCCATCAAATAATACTTTTACAGTTGAAGGTTATATTGCAGATATTTTTGGAGAAATAAAAGAACCATTTAAATATGTTGTTGGTCCTGAAATCATTCCGCTGAGTCTATCACCTAATGGTATTGGTGTTGGTAAAGAATGGGTAAGAGGTACTGTAGATGTTAATGGAGATGGTTACTTTAGCGGTAAGGTTGTTTCTGGCGATTTAGAAATAACCAAAATTGCTTTACTTAATCTCTTTTATCCTGTTGGGTCTATTTACATCAGTATTAGCTCATCTAACCCATCTTACACTATGGGTGGTACATGGCAACGTTTCGCAAATGGTAAAACGTTAGTTGGTGTTGATGAATATGACACTGATTTTAATTCTCCTAATAGAACAGGAGGGGAAAAAGCCCATCAAACTACTGTGGAAGAAATGCCATCACATGCTCATCAATTTAACACAGAGGCGGCTGGTAGCCCAATTGCTCTGGGCTGGGAAAATGGAAATAACAGTGCTATGCGTGCGAAACTAGGAAACTATACTATGGGTTTGCCTACAACAAGTGTTGGTGGTAATAAGCCCCATAACAACTTACAACCTTATACAACAGTCTATATATGGCGCAGAACAGCCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f3fa36349217891476c27369f097a606c9c744c150c0e9a474c7e52ab891beae
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8485
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank