Protein

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Genbank accession
QBX25806.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MADYTSNVSNGYSLLLKVEETKVDKIKNESTIHVALSLRNGYNIFSDWDCRTNLTVAGRTFTNNKRMALMSYNSSLLLIDQTFTVPHNNDGNKIIDISASFSILGSQYYLPNATLSITGKEQRLTYIPRASTGKVTGDTIGSPVTISINRASEDFKHNVSWEFGTLSGPIAENIDTSATWIPSISRLAPEIPNSDTGRGIIKIETFYDDIKTGEDSITITLSLPDSVVPTLGSLSLSDSNQTAQQALSGNYFAALKSNPKVSFNYASGIYGSTIQSYRAEVFKYDSGQWIQLTNNTTDNNGPLGTINWIGKAKVVGYCIDSRGRKSPSKEVIVTMLEYFNPILSFSAFRAGGALNQINVVRKFKVAPLMINGVAKNKVIMRWNIINNTTGTVFNNIGGSANWNASTVFERMDWMATLSGTYPSNNTFTVEGYIADIFGEIKEPFKYVVGPEIIPLSLSPNGIGVGKEWVRGTVDVNGDGYFSGKVVSGDLEITKIALLNLFYPVGSIYISISSSNPSYTMGGTWQRFANGKTLVGVDEYDTDFNSPNRTGGEKAHQTTVEEMPSHAHQFNTEAAGSPIALGWENGNNSAMRAKLGNYTMGLPTTSVGGNKPHNNLQPYTTVYIWRRTA
Physico‐chemical
properties
protein length:628 AA
molecular weight: 68592,22360 Da
isoelectric point:7,06238
aromaticity:0,09873
hydropathy:-0,25350

Domains

Domains [InterPro]
IPR008577
1–556
IPR008577
SSF88874
537–622
SSF88874
QBX25806.1
1 628
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan274
[NCBI] 		2548089 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX25806.1 [NCBI]
Genbank nucleotide accession
MK448895 [NCBI]
CDS location
range 28661 -> 30547
strand +
CDS
ATGGCAGACTATACATCTAATGTCAGCAATGGTTATAGCTTACTATTAAAAGTTGAAGAAACTAAGGTTGATAAAATAAAAAATGAATCAACTATTCATGTTGCTTTGTCTTTACGTAATGGATATAACATTTTTTCCGATTGGGATTGCCGAACAAACTTGACGGTAGCAGGACGAACATTTACTAATAATAAGAGAATGGCTTTAATGAGTTATAACTCGTCATTATTATTAATTGATCAAACTTTTACTGTACCTCATAACAATGATGGAAATAAAATCATTGACATTTCAGCAAGTTTCTCAATTCTAGGATCACAATATTATTTGCCAAATGCCACTCTTAGCATAACTGGTAAAGAACAACGATTGACATATATACCCAGAGCATCAACAGGGAAAGTAACTGGAGATACCATTGGTTCACCAGTTACTATCTCAATCAATCGTGCCTCAGAAGACTTTAAGCATAATGTCAGTTGGGAGTTCGGAACTTTATCAGGACCGATTGCTGAAAATATTGATACTTCAGCGACTTGGATTCCTAGTATCTCACGATTAGCTCCTGAGATTCCAAATTCTGATACAGGACGTGGAATAATTAAAATTGAAACTTTTTACGATGATATTAAAACCGGTGAAGATAGTATTACTATAACGTTAAGTTTACCAGATTCTGTTGTACCTACACTTGGCAGCTTGTCTTTGTCAGACAGTAACCAAACAGCTCAACAAGCACTATCTGGAAATTATTTTGCTGCGTTAAAATCTAACCCGAAAGTTAGCTTTAATTATGCTAGCGGTATTTATGGATCTACCATACAGTCTTATCGGGCAGAAGTTTTTAAGTATGATTCTGGTCAATGGATTCAGTTGACCAACAACACAACAGACAATAACGGTCCCTTAGGAACTATAAATTGGATTGGTAAAGCTAAAGTTGTCGGATACTGTATTGACTCAAGAGGAAGAAAAAGTCCCTCAAAAGAAGTTATCGTAACAATGTTAGAATACTTCAATCCAATCCTATCTTTTTCTGCTTTTAGAGCAGGTGGTGCATTGAATCAAATCAATGTTGTTAGAAAATTTAAAGTAGCTCCTCTGATGATCAATGGGGTAGCTAAAAATAAAGTTATTATGCGGTGGAATATCATCAATAACACAACAGGGACTGTCTTCAATAATATTGGTGGTTCTGCTAATTGGAATGCTAGTACAGTATTTGAACGAATGGATTGGATGGCAACACTAAGTGGAACTTATCCATCAAATAATACTTTTACAGTTGAAGGTTATATTGCAGATATTTTTGGAGAAATAAAAGAACCATTTAAATATGTTGTTGGTCCTGAAATCATTCCGCTGAGTCTATCACCTAATGGTATTGGTGTTGGTAAAGAATGGGTAAGAGGTACTGTAGATGTTAATGGAGATGGTTACTTTAGCGGTAAGGTTGTTTCTGGCGATTTAGAAATAACCAAAATTGCTTTACTTAATCTCTTTTATCCTGTTGGGTCTATTTACATCAGTATTAGCTCATCTAACCCATCTTACACTATGGGTGGTACATGGCAACGTTTCGCAAATGGTAAAACGTTAGTTGGTGTTGATGAATATGACACTGATTTTAATTCTCCTAATAGAACAGGAGGGGAAAAAGCCCATCAAACTACTGTGGAAGAAATGCCATCACATGCTCATCAATTTAACACAGAGGCGGCTGGTAGCCCAATTGCTCTGGGCTGGGAAAATGGAAATAACAGTGCTATGCGTGCGAAACTAGGAAACTATACTATGGGTTTGCCTACAACAAGTGTTGGTGGTAATAAGCCCCATAACAACTTACAACCTTATACAACAGTCTATATATGGCGCAGAACAGCCTAG

Tertiary structure

PDB ID
f3fa36349217891476c27369f097a606c9c744c150c0e9a474c7e52ab891beae
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8485
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank