Protein

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Genbank accession
YP_010088649.1 [GenBank]
Protein name
baseplate wedge tail fiber protein connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MYIQTPKQLIDVGEIGTASTGDILFDGGVKINNDINAIYNAFGDQRKMATANGTGPNGQIIHATGYYQKGGPTDYFTPVPVGSRHDIDASTGGVIVTVARGELGDSVEFINSNGSISVNNPLSIQALDSIKGVAGNLVITTPYTKVTLRCISSGTGGSIWDYSTESMFSHTEIPVDGTWNIISDYINIPLFYKTEYNAAKLLVTCQSANGRKIKSCEINILIDTINSRVISTEYAVMRIGNDNEEDEIANISFSIINNFATMTVSSHINGLRVAAKVISTQKIRVAQ
Physico‐chemical
properties
protein length:287 AA
molecular weight: 30856,38490 Da
isoelectric point:5,22330
aromaticity:0,07317
hydropathy:-0,05470

Domains

Domains [InterPro]
IPR036240
STR
1–287
IPR036240
IPR008987
ATT
7–168
IPR008987 IPR027412
G3DSA:1.20.5.960
Unmapped
17–51
G3DSA:1.20.5.960 IPR027411 IPR056391
YP_010088649.1
1 287
Architecture
ATT
STR
ATT 1-267 | STR 268-287
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010088649.1
1 287
Domain Start End Length (AA) Confidence
N-terminal 1 50 50 0,9729
Central domain 51 249 200 0,0218
C-terminal 250 287 37 0,9991
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-50
Central
51-249
C-terminal
250-287

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage phiE142
[NCBI] 		1777059 Uroviricota > Caudoviricetes > Pantevenvirales > Carettavirus > Carettavirus e142
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010088649.1 [NCBI]
Genbank nucleotide accession
NC_055709 [NCBI]
CDS location
range 103053 -> 103916
strand +
CDS
ATGTATATTCAAACTCCAAAACAATTGATTGACGTTGGCGAAATTGGTACCGCTTCTACAGGCGATATCCTTTTTGACGGCGGTGTTAAAATAAACAATGATATAAATGCTATTTACAATGCGTTTGGCGACCAACGAAAAATGGCAACTGCTAATGGGACAGGACCAAATGGACAAATAATCCATGCTACTGGATACTACCAAAAAGGAGGTCCTACTGATTATTTCACCCCTGTTCCAGTAGGAAGTAGACACGACATAGATGCTTCTACTGGTGGTGTTATTGTTACTGTTGCTAGAGGTGAACTCGGTGATTCCGTGGAATTTATAAATTCAAACGGGTCAATTTCGGTAAACAACCCATTAAGTATCCAAGCATTAGATTCTATTAAAGGTGTTGCAGGTAATTTAGTTATAACTACACCTTATACTAAAGTTACTCTTCGTTGTATTTCTTCTGGTACAGGCGGTTCAATATGGGATTATTCTACAGAAAGTATGTTTAGTCATACCGAAATTCCTGTAGACGGGACATGGAATATTATTTCAGACTATATCAATATTCCTCTATTTTATAAAACTGAATATAATGCTGCTAAACTTTTGGTTACATGCCAATCTGCCAACGGCAGAAAAATTAAATCATGCGAAATAAATATTCTAATAGATACAATTAATTCAAGAGTTATTTCAACCGAATACGCAGTGATGCGCATTGGTAATGATAACGAAGAAGATGAAATTGCGAATATTAGTTTTTCGATAATTAACAATTTTGCCACTATGACAGTTTCTTCACATATAAATGGTCTTCGAGTGGCAGCTAAAGTTATTTCAACTCAGAAAATTAGGGTCGCTCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7bdc1b81c11d6909916fbdd2e11aa31d2292d138de4bf23ba27c310d6ba4000f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7245
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome analysis of a novel virulent bacteriophage, phiE142, a potential biocontrol agent in the combat pathogenic bacteria in food chain Amarillas,L. and Leon-Felix,J. 2016-12-13 — GenBank