Protein

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Genbank accession
GENB_0a315cbd6faa [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARPFEGALNDLLQGVSQQVPRERVAGQCSAQVNMLSDPVTGIRRRPGSLFVSVHDFGPIGEGDALYTQYLERGADGRHLVINTNTGGWWLLDREAKTVVNEGNLSYLLAADRRSIQTTSMGGITYILNTEKRPSATTDNSDKKDPKTTGFYFVKSGAFSKEYDLSVVWSLGSQTVTYTTPDGTTAGDADQSVPEAIARKLVEELIAVGVDFAVRVGPYIYFELITGTDLKITSTSGSPYVGYSNQSQVNLETDLPARLHPSADGALCAVGQSERALVWYRYDADKGVWLESGDYNSVTAISVDVPYKIVDDDVEQHIMEGRLAGDDLTNPAPTFLEERRITGIGTFQGRLVLLSGAYVCMSATGEPDRFFRSTVSSLDPTDRIDIASGSAQNSVFRQALQFNKDLILLGDSTQAVVPSLQQLLAPDNASVVLTSDLACNAFVAPVTTSQTLMYPAPRSEAFSAVLELVPSQFTSSQYVSQDVTTHIPRYIEGEARFMQSASAANIVLMATTGDNRQVIAHEYHFTSQGKVHQAWHKWVFPYRVASLHFARDRIVLFAADDTGSTDQITISTIDPKQGGVTFDVDRLPHLDLMSITPITDGKGIVPIHLRPWVAEGKLTGSVATGTLASEEVAIDVDEITWEFTVEPGFKGSELYLGFRYESLFAPTPPMLKDQNDTLISTAPVRLLRYELTTRNTGEFDVRIVDPTIGLDYSDSTTSLLFGTDDVELGQALVSDLARVPVPCRSNAQSTEMYLSTDGTQDMNILEIEYIIRYNQRRRRV
Physico‐chemical
properties
protein length:780 AA
molecular weight: 85562,91790 Da
isoelectric point:4,78069
aromaticity:0,08462
hydropathy:-0,18756

Domains

Domains [InterPro]
DC_0058
STR
1–780
DC_0058
IPR058003
TTP
9–780
IPR058003
GENB_0a315cbd6faa
1 780
Architecture
STR
STR 1-780
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
GENB_0a315cbd6faa
1 780
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9910
Central domain 143 341 200 0,0470
C-terminal 342 780 438 0,1744
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-341
C-terminal
342-780

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaS_OWB
[NCBI] 		2419783 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
MK474470.1_CDS_[24182..26524] [NCBI]
Genbank nucleotide accession
MK474470.1 [NCBI]
CDS location
range 24182 -> 26524
strand +
CDS

  




        

        
      
    
  






  

  
  

    
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Tertiary structure


  



  

    

      
        
          
            
              

                

                  

                    

                      
PDB ID

                      
4eed6d48ec4ad52da0b5402308312b8e486038a322a6ee80137b1a6dbed5020f

                    

                    
                      ColabFold
                    
                  

                  

                  

                    

                      Source
                      ColabFold
                    

                    

                      Method
                      ColabFold
                    

                    

                      Resolution
                      0,2864
                    

                    

                      Oligomeric State
                      monomer
                    

                    
                  

                  

                    
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Model Confidence

                      

                        

                          

                          Very high
pLDDT > 90
                        

                        

                          

                          High
90 > pLDDT > 70
                        

                        

                          

                          Low
70 > pLDDT > 50
                        

                        

                          

                          Very low
pLDDT < 50