Protein

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Genbank accession
AGH06929.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALSKISGNQISTSTEAIITTLTFLNSNSVFRLPAGTQAQRPSGVSIGTLRFNTDTDAAEIYKADDGSGSAGWAAVSGGGPSLGEDSVIRTNQNTISENITVGPTAGDEFANGMSAGPITIANGFTITIENGGAWSVR
Physico‐chemical
properties
protein length:138 AA
molecular weight: 14042,24110 Da
isoelectric point:4,42210
aromaticity:0,05797
hydropathy:-0,08913

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH06929.1
1 138
Domain Start End Length (AA) Confidence
N-terminal 1 89 89 0,3234
Central domain 90 127 39 0,2466
C-terminal 128 138 10 0,6733
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-89
Central
90-127
C-terminal
128-138

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIM2 R9_2006
[NCBI] 		869663 Uroviricota > Caudoviricetes > Pantevenvirales > Nerrivikvirus > Nerrivikvirus srim2
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH06929.1 [NCBI]
Genbank nucleotide accession
HQ317291.1 [NCBI]
CDS location
range 26573 -> 26989
strand +
CDS
ATGGCACTATCAAAGATTAGTGGAAATCAGATTTCCACGTCAACCGAAGCAATCATCACAACTCTCACATTCCTGAACTCTAACTCTGTGTTTAGATTACCAGCAGGTACTCAAGCACAGAGACCTTCTGGCGTTTCTATTGGTACGCTTCGTTTCAACACAGATACTGACGCTGCTGAAATCTATAAGGCAGACGATGGATCTGGTAGTGCAGGTTGGGCAGCAGTTTCTGGTGGTGGACCATCTCTTGGTGAAGATAGTGTTATTAGAACGAATCAAAATACTATCTCCGAAAATATTACAGTAGGTCCTACGGCAGGCGATGAATTTGCCAACGGTATGAGTGCAGGTCCTATTACGATTGCAAACGGATTTACGATTACTATCGAAAATGGTGGTGCATGGAGTGTTAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
075603e359e8b05ef45d6ae12a83e9c39209a82b0fc6f337e99394879e952f3b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6438
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIM2 isolate R9_2006 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2021-02-24 — GenBank