Protein

View in Explore
Genbank accession
XWX34830.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,74
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MYPYKNKDLEVNIQTGTIKRGNHGILFYSEDKGTASIRIKITDNNRNIDFTKIDLVPYLDLFMEDGSIFKDEEVTMANPTIGLIKYDIPENVIKHVGQVNAKIILKNKNKSIHVADFYFTIGDSGIEGAVEKEVSVNIVDDAVRRIIQENAIELLGDGFKDDVALELQEYVNENKEDFRGPRGLQGEQGPQGEKGEQGPQGIQGLKGATGAKGATGAQGPKGDKGDKGDQGPPGKDGVTPELPDTSNWQKYKLVEDNGTRKQIALGGNLETMHNLDTGFYYATSVPITGIGATSTAGLLSVELNGVKTVKFITFRPYNSKQIWVKRFYNSWSDWEQIGTDISNLTLQKYPLTQDNGNRIRISDIDPAELGAGFYQCWNTRNMPIGVDGSAAYWNIDVTTGQDSTRQIKAVLSSNGETYTKNIHKGADLGWVKVINKSDLKNAVPKFMGAMTKLNNNISLATKTTLYVPWEGTLYNTSGFWDPANPTRLTVPKGVKMVKVAANVLWASNSTGSRFLRIRKNGEYTAGLPYVLRTSESTSATQGNSGVIPVKEGDYFELEVRHEAGENIDFRADPYTWMSIEVVELDEQVVDNFFT
Physico‐chemical
properties
protein length:594 AA
molecular weight: 65617,85860 Da
isoelectric point:5,40587
aromaticity:0,08923
hydropathy:-0,49781

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
8–126
G3DSA:2.60.40.3350 PTHR24637 cd19958
IPR018913
9–145
IPR018913 IPR008160
XWX34830.1
1 594
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_68
[NCBI] 		2815634 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX34830.1 [NCBI]
Genbank nucleotide accession
MZ417342.1 [NCBI]
CDS location
range 2122 -> 3906
strand -
CDS
ATGTATCCGTATAAAAATAAAGATTTAGAAGTAAATATACAGACTGGTACTATTAAAAGAGGAAACCACGGAATTCTTTTCTATTCAGAAGATAAAGGTACAGCTTCTATAAGAATTAAAATAACTGATAACAATAGAAATATCGATTTTACTAAAATTGATTTAGTTCCTTATTTAGATTTATTTATGGAAGATGGTTCCATCTTCAAAGATGAAGAAGTGACAATGGCTAATCCAACTATAGGTTTAATAAAATATGACATACCAGAAAATGTAATTAAACATGTTGGTCAAGTTAATGCAAAAATTATATTAAAAAATAAAAATAAATCTATTCATGTTGCAGATTTTTATTTCACTATTGGGGATAGTGGTATAGAAGGAGCAGTAGAAAAGGAAGTTTCTGTTAATATAGTTGATGATGCAGTTCGTAGAATAATACAAGAGAATGCCATCGAATTATTGGGGGATGGATTCAAAGATGATGTGGCATTAGAATTACAAGAATACGTCAATGAAAATAAAGAAGATTTTAGAGGTCCTAGAGGTTTACAAGGTGAACAAGGTCCTCAAGGTGAAAAAGGTGAACAGGGACCACAGGGTATTCAAGGATTAAAAGGAGCTACTGGTGCTAAAGGTGCTACTGGAGCACAAGGACCTAAGGGTGACAAGGGAGATAAAGGCGACCAAGGACCACCAGGTAAAGACGGTGTTACTCCAGAACTACCAGATACTTCTAACTGGCAAAAGTATAAGTTGGTGGAAGACAATGGCACAAGAAAACAAATTGCCTTAGGTGGAAACTTAGAAACAATGCACAACCTAGATACTGGGTTTTATTATGCAACAAGTGTGCCAATAACAGGTATAGGCGCAACAAGTACAGCAGGTCTACTATCAGTAGAATTAAATGGTGTAAAAACAGTTAAATTTATTACATTTAGACCTTATAACTCTAAACAAATTTGGGTTAAGAGATTCTACAATTCTTGGTCTGATTGGGAACAAATAGGTACAGATATTAGTAATTTAACATTGCAAAAATATCCTTTAACTCAAGATAATGGAAATAGAATAAGAATATCAGATATTGACCCAGCAGAATTAGGTGCAGGTTTTTACCAATGTTGGAATACTAGAAACATGCCTATTGGAGTAGATGGTTCTGCTGCATATTGGAATATAGATGTTACAACAGGTCAAGATAGCACAAGACAAATAAAAGCAGTATTGAGTAGCAATGGTGAAACATATACTAAAAACATTCATAAAGGTGCAGATTTAGGTTGGGTTAAAGTTATCAATAAGAGCGACTTAAAGAATGCTGTACCTAAGTTTATGGGAGCCATGACTAAGTTAAACAACAACATATCATTAGCAACTAAAACAACACTATATGTTCCATGGGAAGGAACATTATACAATACATCTGGATTCTGGGACCCTGCTAATCCTACAAGATTAACTGTTCCTAAAGGTGTTAAAATGGTAAAAGTAGCAGCTAATGTATTATGGGCTTCAAATTCTACAGGTTCAAGATTTTTAAGAATTAGAAAAAATGGAGAATATACAGCAGGATTACCGTATGTTTTAAGAACATCAGAATCAACATCTGCAACTCAAGGTAATTCAGGCGTTATTCCAGTTAAAGAAGGAGATTATTTTGAATTAGAAGTAAGACATGAAGCAGGAGAAAATATAGATTTTAGGGCAGACCCATATACATGGATGTCTATAGAAGTGGTAGAGTTAGATGAGCAAGTAGTTGATAATTTTTTTACCTAA

Tertiary structure

PDB ID
5628b1370772287390cdb8140c46b9e3e00d199dc620fb079d700b311ce68548
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8022
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank