Protein

View in Explore
Genbank accession
AVZ45320.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
Protein sequence
MSTTITNLPETSKVNGSDYLVLDQPDKTVKSTVSNFLTDTGVVLATQLKDTDGADLIQSSNGNTVQEELNNNLLNDREQWRRSLAEAGLTLVDGSFEEGATVGSVTDAVWYIAGAQCYTWGSGFPKDVPPKSTPTSTGGVGPSAWVSVGDASLRLWVNKNTTIIFNSVSELISGILPSGDGATFSEGMTVKTYKNKHGIRSESEWLISTTQNDDTYSIPIAGGFNANLIVRESMGYDEFGFGGADADENSVAIDEANRVARANSIISKLSFPSGSYLSNTINLDVDRRGFTFSGAGNDATIIMSTSSDISLHHVGIDPRDRNRDRFHWHQTVEGFTVNGNISNNGASAAARAIYTAPYATVRNKSIDHRISNYDLLHLVMYWYGHSQGTKNGSTATKYGVRVRNNSIKLMGYIGSSDKAQCTLSIEGMSTTLTSPASINDNTVTVADASGFDTWFEIAFTNSTGGVETRRITAISGNVITLDRAMTSDFPSGTKVEVPIIGTSVIAATVETGEIRIGDSQATFVAGNYSEEAKIYVTKYPRSLTITGTSVAESSPSMTIEVDKRSTIKIDNNDATFSIAVNIKDRSGSIGDRIDLYNAPTIDISMSTRVQNPILLNGVYGLSSLKIEKTFDTVAQDNRFTRMKFTGLNHNSSVGGSTVEVMKLYQDSTQYGFDGYTFDLDVTCRRDAASSLATPGILKRYGTSSAVPATQNASPVSLFSDFNATSGYDVFIGASSNRGTINVRPHPTAQIKATINGVVTSVI
Physico‐chemical
properties
protein length:762 AA
molecular weight: 81757,66070 Da
isoelectric point:5,20988
aromaticity:0,07874
hydropathy:-0,24856

Domains

Domains [InterPro]
G3DSA:2.10.10.80
89–158
G3DSA:2.10.10.80
IPR040775
93–150
IPR040775
AVZ45320.1
1 762
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM-Ro121c4YLVW
[NCBI] 		2144176 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVZ45320.1 [NCBI]
Genbank nucleotide accession
MH051333.1 [NCBI]
CDS location
range 38640 -> 40928
strand -
CDS
ATGTCAACTACAATTACTAATTTACCCGAAACATCAAAAGTTAATGGTTCTGATTACCTGGTTTTAGACCAACCTGATAAGACTGTTAAAAGCACAGTTTCCAACTTTCTTACTGACACTGGGGTGGTTTTAGCCACCCAGTTGAAAGATACAGATGGAGCAGATTTAATACAATCCTCAAATGGTAATACTGTTCAGGAAGAGTTGAATAACAATCTTCTTAATGATCGTGAACAGTGGCGTCGTAGTCTTGCCGAGGCTGGGTTAACTCTTGTTGATGGTAGTTTTGAAGAAGGGGCTACAGTGGGCAGTGTAACTGATGCTGTCTGGTACATAGCGGGTGCTCAGTGCTACACATGGGGGTCTGGTTTCCCTAAAGATGTACCACCTAAATCAACCCCTACATCAACTGGTGGCGTTGGTCCTAGTGCGTGGGTTAGTGTTGGCGATGCTTCTTTGAGATTGTGGGTTAATAAAAACACAACTATAATATTTAATAGCGTTTCAGAGTTAATATCTGGAATTCTGCCATCAGGGGATGGTGCCACATTCAGCGAAGGGATGACTGTAAAAACATATAAAAACAAACATGGAATAAGATCTGAGTCAGAATGGTTAATATCAACAACACAAAATGATGATACATACTCAATCCCAATAGCGGGCGGGTTTAATGCCAACTTAATTGTAAGAGAGAGCATGGGGTATGATGAATTCGGTTTTGGCGGTGCAGACGCAGATGAAAACTCAGTTGCTATAGATGAAGCAAACAGGGTTGCAAGGGCTAACAGTATAATATCTAAGTTATCATTCCCTTCCGGAAGTTATCTATCAAATACAATCAACCTTGATGTTGATCGTCGAGGATTTACTTTTTCCGGTGCCGGAAATGACGCAACAATAATCATGTCAACGTCATCTGACATTTCACTGCACCATGTCGGAATTGATCCGCGTGACAGGAACCGTGACCGTTTCCACTGGCACCAAACCGTCGAAGGGTTCACCGTAAATGGCAACATTTCTAATAATGGTGCCAGCGCAGCAGCCAGAGCTATCTATACTGCGCCTTATGCTACTGTTCGTAATAAATCAATTGATCACCGTATCAGCAACTACGATCTTTTACATCTTGTTATGTATTGGTATGGACACTCACAGGGAACAAAAAACGGCTCGACGGCTACTAAATACGGTGTTCGAGTTCGTAATAACTCCATCAAGTTGATGGGTTACATTGGTAGTAGTGACAAAGCCCAATGTACTTTGTCTATTGAGGGTATGAGCACCACACTAACATCGCCAGCATCTATCAATGACAACACTGTTACTGTTGCAGATGCCTCTGGTTTTGATACCTGGTTTGAGATTGCTTTTACAAACTCGACTGGCGGTGTTGAGACTCGAAGAATTACAGCAATATCGGGAAACGTCATTACTCTTGATCGAGCAATGACATCTGATTTCCCTTCCGGAACTAAAGTAGAGGTTCCGATTATTGGAACGTCTGTTATTGCTGCAACTGTTGAAACTGGTGAAATACGCATAGGAGACAGCCAGGCAACCTTTGTGGCGGGAAACTATAGCGAAGAAGCAAAAATATATGTAACTAAATATCCACGTTCTTTGACAATAACAGGAACTTCAGTAGCAGAGTCATCTCCATCTATGACAATAGAGGTAGATAAGAGATCGACAATAAAAATTGATAATAATGATGCTACATTTTCTATTGCCGTAAATATCAAAGATCGTTCAGGTTCCATTGGTGACAGGATTGACCTGTATAACGCGCCGACTATTGATATAAGCATGAGTACGCGTGTTCAGAACCCTATACTTCTGAACGGTGTATATGGTTTAAGCAGCCTTAAAATTGAAAAGACATTCGATACAGTTGCGCAGGACAATCGATTTACCAGAATGAAGTTCACAGGACTTAACCATAACTCTTCTGTCGGAGGTTCAACAGTAGAAGTAATGAAACTTTATCAGGATTCAACACAATACGGGTTTGATGGATACACATTTGATCTTGACGTTACTTGCCGTCGCGATGCTGCATCATCCTTAGCAACACCAGGTATCCTGAAGCGTTATGGAACATCATCTGCTGTGCCTGCCACTCAGAATGCAAGCCCGGTTAGCCTGTTCTCGGATTTCAACGCAACTTCAGGGTATGATGTATTCATTGGGGCATCAAGCAATAGAGGAACCATTAATGTTAGACCTCATCCAACTGCACAGATAAAAGCAACAATCAATGGTGTTGTTACTTCAGTTATATAA

Tertiary structure

PDB ID
d41b83b237086185aac71e03ae9ee65ee6a56380339509091daf88f47988d4e8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6168
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of Bacteriophages against O121, O145 and O157 Shiga Toxin-Producing Escherichia coli (STEC) from Non-Fecal Composts and the Potential Use for Improvement of Produce Safety Liao,Y.-T., Quintela,I.A., Bridges,D.F., Liu,F., Sun,X. and Wu,V.C. 2019-04-02 — GenBank