Protein

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Genbank accession
XOD31756.1 [GenBank]
Protein name
long-tail fiber proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,62
TF
Evidence RBPdetect2
Probability 0,84
Protein sequence
MSANTAVSPKNLKWIVQSEPTWAATPSIRGFVKTSSGSITFVGNDTAGSTQDLELYEKNSYAVSPYELNRVLANYLPLKAKAADANLLDGLDSSQFIRRDIAQTVNGSLTLTNQTNLSAPLVSSSTATFGGSVSANSTLTISNTGTATQLIFEKGPQSGTNPTQTMTVKVWGNQFSGESDTTRSTVFEVSDETSSHFYSQRNKAGNITFNINGTVTPINVNASGTLNANGVATFGNSVTATGEIISRSANAFRSINGNYGFIIRNDGSVTNFMLTASGDQTGGFNGLRPLTINNASGQVTIGESLIIAKGATINSGGLTVNSRIRSQGTKTSDLYTRAPTSDTVGFWSIDINDSATYNHFPGYFEMVEKTNEVTGLPYLERGE
Physico‐chemical
properties
protein length:383 AA
molecular weight: 40602,22530 Da
isoelectric point:5,57059
aromaticity:0,08094
hydropathy:-0,28225

Domains

Domains [InterPro]
DC_0932
STR
1–382
DC_0932
IPR048390
ATT
179–292
IPR048390 IPR048391
XOD31756.1
1 383
Architecture
STR
ATT
STR
ATT
STR 1-178 | ATT 179-292 | STR 293-338 | ATT 339-382 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD31756.1
1 383
Domain Start End Length (AA) Confidence
N-terminal 1 309 309 0,2682
Central domain 310 372 64 0,5740
C-terminal 373 383 10 0,9727
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-309
Central
310-372
C-terminal
373-383

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage sb1
[NCBI] 		3387546 Viruses >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD31756.1 [NCBI]
Genbank nucleotide accession
PQ666539 [NCBI]
CDS location
range 154007 -> 155158
strand +
CDS
ATGTCAGCAAATACTGCTGTATCTCCAAAAAATTTAAAATGGATTGTGCAGAGTGAACCTACTTGGGCAGCAACTCCATCCATAAGAGGATTTGTTAAAACTTCATCCGGTTCAATTACATTCGTCGGTAATGATACTGCTGGTTCTACACAGGACTTAGAACTATACGAGAAAAATAGTTATGCAGTATCACCATATGAATTAAACCGTGTATTAGCAAATTATTTGCCATTAAAAGCAAAAGCTGCTGACGCAAATTTATTAGATGGTCTAGATTCATCTCAGTTCATTCGTAGGGATATTGCCCAGACAGTTAATGGTTCACTAACCTTAACCAACCAAACGAACCTGAGTGCCCCTCTTGTATCATCTAGTACTGCTACGTTTGGTGGATCAGTTTCAGCAAATAGTACACTAACTATTTCTAATACTGGAACGGCAACTCAATTAATTTTTGAGAAAGGACCTCAATCTGGAACAAACCCAACGCAGACAATGACTGTAAAAGTGTGGGGAAATCAATTTAGCGGGGAGTCAGATACAACACGTTCTACTGTATTTGAAGTTAGTGATGAAACTTCTAGTCATTTTTATTCTCAGCGTAATAAAGCTGGAAATATAACATTTAATATCAACGGTACAGTAACTCCGATAAATGTTAATGCTTCAGGAACATTGAATGCGAATGGCGTTGCTACATTTGGTAATTCAGTCACGGCAACTGGTGAAATTATTTCTCGAAGCGCAAATGCTTTCCGTTCTATTAATGGAAATTACGGTTTCATTATTCGTAATGACGGGTCAGTAACGAATTTTATGCTTACTGCATCGGGCGATCAGACTGGTGGATTTAATGGATTACGTCCATTAACTATTAATAATGCATCTGGTCAAGTAACGATTGGTGAAAGCTTAATCATCGCCAAAGGTGCTACTATAAATTCAGGTGGTTTGACTGTTAACTCGAGAATTCGTTCTCAGGGTACTAAAACATCTGATTTATATACCCGTGCTCCAACATCTGATACTGTAGGATTCTGGTCAATCGATATTAATGATTCAGCCACTTATAACCATTTCCCGGGTTATTTTGAAATGGTTGAAAAAACTAATGAAGTGACTGGACTTCCATACTTAGAACGTGGCGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cc7006a7f6f935116eb2c067f7dcba6b6a013723b7dce724c7ed7d24091450e3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6516
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50