Protein

View in Explore
Genbank accession
YP_009293489.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MNDVTVVTSVTYPSPESLALVADVQYHEPYLSAALNRKFRGIVDPGFYAGFLPKPGGGMNLLITSVDGDKTAGAASVDIGEFYQVTIQQRKDISLALSAGKKYAIVLKGRYLLGEDTYQVNTASHIHAAEFVARTYTDSYQLGDGELLVCTVNIPAGVSAITQEMIDTSERINRTIGIDISDSVTSSRSDVAASSLAVKKAYDLAKSKYTAQDASTTQKGLVQLSSETNSDSETMAATPKAVKSVKDLADTKAPIESPSLTGTPSAPTAAQGTNSTQIANTAFVKAAITALINGAPGTLDTLKEIAAAINNDPNFSTTINNALALKAPLASPALTGVPTAPTAAQGTNNTQIATTAYVRAAISALVGSSPEALDTLNELAAALGNDPNFATTMTNALAGKQPLDATLTALAGLATGANKLPYFTGKDTVAQTDLTSVGRDILAKTSTLAVIQYLGLGETINLAAGAVQKTGDEMNGKLTLPQTSSFGVNTNNTLGGSSIAIGDNDTGLKGNGDGNLAFMANNVLAGYFNENELQHSKKMLTKNFQALVDNNWPEGAGGFSGQLSSEAPFSVPMVHRQNNDNNFFPLLKGKVSLESGYPVAASFGILTSGNTNFPQIAIHAKTDFDVNDKIWVFDVATGEFRAPGRITATEILLSGKSRVAPDGNLYGDVWGGWLNDFLNNNYNRKNTASLGDYGWVRDESTGFIMQWGTLGSSNGTYNFPREFPASCFAVFVTNNNQQGGAVDNAFGYPVSKSQFFAATKDSSSSNHINNYPVAWFAIGR
Physico‐chemical
properties
protein length:780 AA
molecular weight: 81980,46310 Da
isoelectric point:5,12105
aromaticity:0,07949
hydropathy:-0,14513

Domains

Domains [InterPro]
DC_0070
STR
50–331
DC_0070 G3DSA:6.20.70.20 G3DSA:2.60.40.3940
IPR005068
STR
174–212
IPR005068 IPR005068 DC_1589 G3DSA:6.20.70.20 G3DSA:2.60.40.3940
IPR051934
Unmapped
326–764
IPR051934
IPR054075
RBD
700–780
IPR054075
YP_009293489.1
1 780
Architecture
STR
RBD
STR 50-530 | RBD 652-780
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SJ46
[NCBI] 		1815968 Uroviricota > Caudoviricetes > Punavirus >
Host Salmonella enterica subsp. enterica serovar Indiana
[NCBI] 		286783 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009293489.1 [NCBI]
Genbank nucleotide accession
NC_031129.1 [NCBI]
CDS location
range 28514 -> 30856
strand +
CDS
ATGAATGACGTTACAGTTGTTACATCAGTTACTTACCCATCACCCGAGTCGTTGGCTCTGGTGGCTGATGTGCAATACCACGAACCATATCTGTCAGCCGCGCTAAACCGAAAATTCAGGGGGATTGTTGACCCGGGATTTTATGCCGGTTTCTTACCTAAGCCTGGCGGTGGGATGAACCTGTTAATCACCTCAGTGGATGGTGATAAAACCGCAGGCGCGGCGTCGGTGGATATTGGTGAATTCTACCAGGTAACTATTCAGCAACGTAAGGATATTTCTCTTGCACTTAGTGCAGGCAAGAAATATGCAATTGTGCTGAAGGGAAGATACCTCCTTGGAGAAGATACCTATCAGGTGAATACCGCGTCACATATTCATGCGGCTGAATTTGTTGCCAGAACCTATACCGATTCATATCAGTTAGGAGATGGAGAGCTGCTTGTTTGTACGGTGAATATCCCTGCTGGCGTATCAGCCATTACCCAGGAGATGATTGATACATCCGAGCGTATTAACCGCACGATCGGCATTGATATTTCAGACTCTGTAACCAGTAGCAGAAGTGATGTTGCTGCAAGTTCGCTGGCAGTTAAAAAAGCCTACGATCTGGCGAAAAGCAAGTATACGGCGCAGGATGCAAGCACAACGCAAAAGGGATTAGTTCAGCTCAGTAGCGAAACTAACAGCGACAGCGAAACAATGGCGGCTACCCCTAAAGCCGTTAAGTCTGTAAAAGATCTTGCTGATACCAAAGCGCCAATAGAAAGCCCGAGTCTGACAGGAACGCCAAGCGCGCCGACGGCAGCGCAAGGTACAAACAGCACGCAGATAGCAAATACAGCCTTTGTTAAGGCAGCTATAACTGCACTTATCAACGGTGCACCTGGCACACTGGATACACTTAAAGAAATAGCTGCTGCGATCAATAACGACCCGAATTTCAGCACAACTATCAACAATGCCCTGGCTCTCAAAGCGCCTTTGGCAAGCCCTGCATTAACGGGTGTCCCTACTGCGCCGACCGCCGCACAGGGCACAAATAATACGCAGATTGCTACGACCGCTTATGTAAGAGCTGCCATATCCGCATTGGTTGGTTCATCACCAGAAGCTCTTGATACCCTGAATGAGCTTGCCGCAGCACTTGGCAATGACCCGAACTTTGCGACAACAATGACAAATGCGCTGGCAGGCAAACAGCCTCTGGATGCAACTTTAACCGCGCTCGCTGGCCTTGCGACTGGTGCAAACAAACTGCCTTATTTCACTGGTAAGGATACGGTAGCTCAGACTGATTTAACGTCAGTCGGTCGCGATATTCTGGCTAAAACAAGCACACTGGCCGTTATCCAATACCTTGGTTTAGGCGAAACGATAAATCTGGCTGCGGGCGCAGTCCAGAAAACTGGCGATGAGATGAACGGGAAGTTAACCCTGCCACAGACATCTTCCTTCGGCGTGAATACTAATAACACACTGGGCGGTAGTTCCATCGCTATCGGTGATAACGATACCGGGCTCAAAGGGAACGGCGACGGTAATCTGGCATTTATGGCTAACAACGTGCTGGCAGGATATTTTAATGAAAATGAATTGCAGCACAGTAAAAAGATGCTGACTAAAAATTTTCAGGCTCTTGTTGATAATAACTGGCCGGAGGGGGCGGGGGGATTTTCTGGTCAGTTAAGCAGTGAAGCACCGTTTAGTGTACCAATGGTTCACCGTCAGAATAATGATAATAATTTTTTCCCGCTCCTGAAAGGAAAGGTCTCACTGGAGTCTGGCTATCCTGTAGCCGCCTCTTTCGGAATATTAACTAGTGGGAATACTAATTTCCCACAAATTGCAATTCACGCGAAAACAGACTTTGATGTTAACGATAAAATATGGGTATTTGATGTTGCAACCGGAGAATTTCGCGCGCCGGGCAGGATTACAGCTACAGAAATTTTATTGAGCGGTAAAAGCCGTGTTGCTCCTGATGGTAATTTATATGGTGATGTGTGGGGTGGCTGGCTGAATGACTTCCTTAATAACAATTACAACCGCAAAAATACTGCCAGTCTGGGTGATTATGGATGGGTTCGTGACGAAAGCACCGGGTTTATAATGCAATGGGGGACACTTGGTAGCTCAAACGGAACCTACAATTTCCCGCGAGAGTTTCCGGCATCCTGCTTTGCTGTATTTGTCACCAACAATAATCAGCAGGGGGGGGCGGTGGATAACGCGTTTGGATATCCGGTGAGTAAAAGCCAGTTTTTTGCCGCTACAAAAGATTCATCGAGCAGTAATCATATAAATAACTACCCTGTAGCCTGGTTTGCGATTGGGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
30730fd0e41e2f3ec1b95d5e032b9f1359bfc0bd9744736ca4effe3b0072c533
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6711
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a P1-like bacteriophage carrying CTX-M-27 in Salmonella spp. resistant to third generation cephalosporins isolated from pork in China Yang,L., Li,W., Jiang,G.Z., Zhang,W.H., Ding,H.Z., Liu,Y.H., Zeng,Z.L. and Jiang,H.X. 2017 28098241 GenBank