Protein

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Genbank accession
YP_007674511.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,64
Protein sequence
MGFKNYLWDEAWELNVSRGKVRGAFHIIKFGENLDIDGSMETIWDGGGLYTYLTAAAVVTVTSTDGDDAAAGTGARTVTVEGLDANYNQVSETLTVGGSAGSVEFFRVFRAFVASSGSSGTNEGTISIASGATTLAQIRTVGSPTSTGLGQTFMSIYTVPAGYTGFIYQWDISTAKSDGDVFLVCRGHNDNGTWRSHDVAHTNQNDIERNYKFPLKVEEKSDCEIRAYSDTNNMKCAATFCILLIQNQTE
Physico‐chemical
properties
protein length:250 AA
molecular weight: 26977,48760 Da
isoelectric point:4,77149
aromaticity:0,10400
hydropathy:-0,20760

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007674511.1
1 250
Domain Start End Length (AA) Confidence
N-terminal 1 89 89 0,2361
Central domain 90 239 151 0,0016
C-terminal 240 250 10 0,9979
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-89
Central
90-239
C-terminal
240-250

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SKS1
[NCBI] 		754042 Uroviricota > Caudoviricetes > Llyrvirus >
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007674511.1 [NCBI]
Genbank nucleotide accession
NC_020851 [NCBI]
CDS location
range 111949 -> 112701
strand -
CDS
ATGGGATTTAAAAATTACTTATGGGACGAAGCATGGGAATTGAATGTTTCTCGTGGTAAAGTTCGTGGTGCTTTTCATATCATCAAGTTTGGAGAAAATCTTGATATTGATGGTTCCATGGAAACTATCTGGGATGGTGGTGGATTATATACATATCTCACAGCAGCAGCAGTAGTAACAGTCACTAGCACTGATGGTGATGATGCGGCAGCAGGAACCGGTGCAAGAACTGTAACTGTCGAGGGATTAGACGCAAACTATAATCAAGTATCAGAAACCTTAACCGTTGGTGGTTCTGCTGGTAGTGTAGAATTTTTTAGAGTATTTCGTGCTTTTGTTGCAAGTTCTGGTTCTAGTGGAACAAATGAAGGAACAATTTCAATTGCTTCTGGTGCAACAACATTAGCACAAATTCGTACTGTAGGATCTCCAACTTCAACAGGATTGGGTCAGACATTTATGTCCATATATACTGTTCCTGCAGGTTATACAGGTTTCATTTATCAATGGGATATATCGACTGCAAAATCTGACGGTGATGTTTTTCTAGTATGTAGAGGTCATAATGATAATGGAACATGGAGATCTCATGATGTTGCACATACAAATCAAAACGATATTGAAAGAAATTACAAGTTTCCATTAAAAGTTGAAGAAAAAAGTGATTGTGAAATCAGAGCATATTCTGACACAAATAATATGAAATGTGCAGCAACTTTTTGCATTTTACTTATACAAAATCAAACTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fc220d4b3f074a45a3e2bcb4853da4aaade8f88876cd57452738c39665b98cf5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6803
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-SKS1 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank