Protein

View in Explore
Genbank accession
YP_010668600.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MKDIQIVNIDYSAVDPKYRRKEKHVIAKIPAPWLVPDEGPFYTQGIRLLNGGTPLIYEKDFEYATPAADITEQLGRDIYHHIKLKEHILTTATAIDIEYQTVGDPIIGRNKLLQLLEDMIIKGEPIDITTSVIGMPDTFFPSKHSMDVTKPDEVVGFGNLIQLFSILGSRVEAGSGQIKELLNKLNEDAFKKLDYVQNLQWNAIMRHATKDRNPHLIKAPDVQLSNLSNFATANLQQEVEGVRSDLYSTPRGLGEIVKEAEPDASEFVFQNELPFSYYGSGIYLPPPISGSFEGLGGDQETGCFIQEGNGWLVGLLRAFDGKVRNLFYIYDTQLTDDPRQGFWRQSYVQYKHPAITAAGCDANYVISGSGDRVLMLGDNTKSRWWICDPNSTLDAAAHNFKEVDTSAMHARPNWSFNFWHQGNVFRVGDWLYFLMFTPEINLFPGDYKGAVSGDNMIGWLYRAPASDLTNPAKTNIKFEPCTINYDNLRRERRNSQAAFSMDRFEVDGNNLITSGGGCQYSIPVNSFMSHRRRNVIVVENPNNPNQARIRFYALVRPTYNDGGLTVQQSQMTVDYLFDNNTLTLALDPKWKYMYYDLRQNWITNLTEEELRRQWVPWGGGAKGNLPGTGTAIPVSYVPGFGHIGILTGSDGGMPYIVCKVLNNPSRDPRRDWEYFAQPNSWRDASGRMNDGNQYIQPDTPFGFTSFPRWYSDLYDVNGQILTTPIELFIADNPGVDGQHYYREVEPGTGTQYIPRPEAKLMDGTIPYAREMNSKFGPVTNRLPCSLGRVNNPKSKDQYSTEYGIFTVTWPNYRVAKTPLFSPVVVSKDTYAPPTMDSEGSIVIPLLLDHTIVNGKMTLSPNPSKSVHIPAYIWRDWMHRLIGAEMDNVIDIVVDFFISPKQDGLAYKRHSYAMFTFHTTDNPKAIRQIISKFTWAVRSYNSQGVRIMQVSSEQYPFVSSVGSQPYSLAPGVDNTLIDAGWNDAQFNPNGTWKILNVPSQLSTPNMQVLEHRELGEGVYEIFAYTGWRIFTQSYSRIFGFKDYNNPHKPKETFAFSPYTGAFVSYATYGVANPEHGMCTGENYLTVGGGAVDMTISEVGAKKVMRGATFSVGNWSVFIASDIVVSFGGYSMTAVKRNFDLRNFTSKFRNNTFYIYCVARGSKAEYEVSGMLRYPRSDSLLVAKIITGDLGVESIERYQPFAIAGFPLTRVRDAGIPVSSGSIFDEGTYSFIKYSELYTD
Physico‐chemical
properties
protein length:1238 AA
molecular weight: 139472,68860 Da
isoelectric point:5,89695
aromaticity:0,12359
hydropathy:-0,36236

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage D3
[NCBI] 		2593327 Uroviricota > Caudoviricetes > Chimalliviridae > Ludhianavirus D3 >
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010668600.1 [NCBI]
Genbank nucleotide accession
NC_070957.1 [NCBI]
CDS location
range 115789 -> 119505
strand +
CDS
ATGAAAGACATTCAGATTGTCAACATTGACTATTCAGCAGTAGACCCGAAATACCGTAGAAAAGAGAAGCACGTAATCGCAAAGATTCCTGCTCCCTGGTTAGTGCCTGATGAAGGTCCTTTCTACACTCAAGGTATTCGGTTGCTGAATGGTGGAACACCGCTCATTTACGAGAAAGATTTCGAGTACGCCACTCCGGCAGCTGATATCACAGAACAACTTGGCCGTGATATTTATCACCACATCAAGTTGAAAGAACACATCCTCACAACAGCAACAGCTATCGATATCGAATACCAAACCGTTGGCGACCCCATCATTGGTCGCAATAAACTGTTGCAACTTTTGGAAGACATGATCATCAAGGGCGAACCCATTGATATCACTACAAGTGTCATCGGCATGCCCGACACTTTCTTCCCGTCCAAACACTCCATGGACGTTACCAAACCTGACGAAGTTGTGGGCTTTGGTAACCTTATCCAGTTGTTCAGTATTCTCGGATCACGTGTCGAAGCAGGTTCCGGTCAAATCAAGGAACTGCTGAATAAATTGAACGAGGACGCTTTCAAGAAACTGGACTACGTTCAGAACCTTCAGTGGAACGCCATCATGCGGCACGCCACCAAGGATCGTAACCCGCACCTGATCAAAGCCCCTGATGTTCAGTTGAGTAACCTTTCCAACTTCGCAACAGCCAATCTTCAGCAAGAAGTAGAAGGTGTGCGTTCTGACCTTTATTCCACACCCCGTGGTCTGGGGGAGATCGTTAAAGAAGCCGAACCTGATGCTAGTGAGTTTGTTTTCCAAAACGAACTTCCGTTCAGTTATTATGGATCGGGCATTTACCTCCCTCCTCCTATCTCAGGTTCATTCGAAGGTTTAGGTGGAGACCAGGAAACTGGATGTTTCATCCAAGAAGGTAACGGTTGGCTGGTTGGACTCCTGCGAGCATTTGACGGAAAGGTTCGGAACCTCTTCTATATTTACGACACCCAACTGACAGACGACCCTCGTCAAGGGTTCTGGCGCCAGAGTTATGTTCAGTACAAACATCCCGCTATCACTGCGGCTGGTTGTGATGCCAACTACGTGATCTCTGGTTCTGGTGACCGTGTTCTCATGCTTGGTGATAACACCAAGAGTCGGTGGTGGATCTGTGATCCTAACTCCACTCTTGACGCAGCGGCTCACAACTTTAAAGAAGTTGATACATCCGCCATGCACGCCCGTCCGAACTGGAGTTTCAATTTCTGGCACCAAGGTAACGTGTTCCGGGTTGGTGATTGGCTTTACTTTTTGATGTTCACTCCTGAGATAAACTTGTTCCCTGGCGACTATAAAGGGGCCGTCAGCGGTGACAATATGATCGGATGGTTATACAGGGCACCTGCCTCTGATCTCACCAATCCGGCAAAGACTAACATTAAGTTTGAACCTTGCACCATCAATTACGATAACCTCAGAAGAGAACGCCGTAACTCTCAAGCCGCCTTTTCTATGGACCGGTTCGAGGTTGATGGTAATAACTTGATTACCTCAGGTGGTGGGTGTCAGTACAGTATTCCAGTCAACTCATTTATGTCCCATCGACGTCGTAACGTCATCGTGGTCGAGAACCCCAACAATCCAAACCAAGCTAGAATTCGGTTTTACGCCTTGGTACGTCCTACCTACAACGATGGTGGTTTGACAGTACAACAATCCCAAATGACGGTGGATTATCTTTTCGATAACAACACGCTGACTTTGGCACTGGATCCCAAGTGGAAGTACATGTACTATGACCTCCGGCAAAACTGGATAACCAACCTTACCGAGGAAGAACTCCGGCGTCAGTGGGTTCCCTGGGGTGGTGGTGCAAAGGGGAACCTTCCTGGAACGGGTACTGCTATTCCAGTGTCTTATGTACCAGGGTTTGGACACATAGGGATACTGACAGGGTCCGATGGTGGGATGCCCTACATCGTGTGTAAAGTTTTGAACAACCCATCAAGGGACCCGCGTCGTGATTGGGAATACTTCGCTCAACCCAATTCGTGGAGGGATGCTTCGGGGCGAATGAACGATGGTAACCAGTACATCCAACCAGACACTCCGTTTGGCTTTACTTCGTTCCCTAGGTGGTACAGTGATCTTTACGATGTGAACGGTCAAATACTGACAACCCCCATCGAACTGTTCATTGCAGATAACCCAGGTGTTGATGGGCAGCACTACTACCGTGAAGTAGAACCAGGAACTGGGACACAATACATCCCCCGTCCAGAAGCCAAATTGATGGACGGTACTATTCCCTACGCACGGGAAATGAATAGTAAGTTTGGACCAGTGACGAACCGACTCCCGTGTTCACTTGGCCGGGTGAACAATCCAAAGTCCAAAGACCAGTATTCCACCGAATACGGGATTTTCACTGTAACTTGGCCGAATTACCGAGTCGCCAAAACACCGTTGTTTTCACCGGTAGTTGTGAGTAAGGACACGTACGCTCCGCCCACTATGGATTCCGAAGGGAGTATTGTCATACCGTTGTTGTTGGATCACACCATCGTTAATGGTAAAATGACGTTAAGTCCGAATCCATCTAAGTCTGTACATATCCCCGCTTATATTTGGCGTGACTGGATGCACAGATTGATTGGAGCAGAAATGGACAACGTCATCGACATTGTCGTTGACTTCTTCATTTCCCCCAAACAGGATGGTCTCGCCTATAAGCGTCATTCCTACGCGATGTTCACTTTCCACACCACCGATAATCCAAAAGCCATTAGACAGATTATATCCAAGTTTACTTGGGCTGTAAGAAGTTATAACTCTCAAGGTGTGAGGATAATGCAGGTGAGTTCTGAACAGTACCCGTTCGTCTCTTCTGTTGGTTCTCAACCATATTCACTCGCACCAGGTGTCGATAACACACTCATCGATGCAGGATGGAACGACGCCCAGTTCAACCCGAACGGAACTTGGAAAATTCTGAACGTCCCGTCACAACTTTCGACACCCAACATGCAAGTGTTGGAACACCGTGAGCTCGGTGAAGGAGTGTATGAGATTTTCGCGTACACTGGCTGGCGGATTTTCACGCAGAGCTATTCACGGATTTTCGGATTTAAGGACTATAACAATCCTCATAAACCCAAAGAGACGTTTGCATTTTCACCGTACACTGGTGCGTTCGTAAGTTACGCAACATACGGCGTCGCTAACCCTGAACACGGGATGTGTACTGGTGAAAACTATCTCACGGTGGGCGGTGGTGCTGTCGATATGACCATCAGTGAGGTGGGTGCTAAGAAAGTAATGCGAGGTGCGACGTTCTCTGTGGGTAACTGGAGTGTGTTTATCGCAAGTGATATCGTGGTCTCTTTCGGTGGATACTCGATGACCGCAGTGAAACGCAACTTTGATCTTCGGAACTTCACCAGTAAGTTTAGAAACAATACTTTCTACATCTATTGTGTGGCAAGAGGTTCCAAAGCTGAATACGAAGTATCTGGTATGCTTCGTTACCCACGTTCTGATTCGCTCTTGGTCGCCAAGATTATCACTGGTGATCTGGGTGTTGAAAGTATCGAACGTTATCAACCGTTTGCCATTGCTGGATTCCCGCTTACGCGAGTGAGGGATGCTGGTATCCCAGTTAGTTCTGGGTCCATCTTTGATGAGGGTACTTACTCCTTTATCAAGTATTCCGAACTTTACACTGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6ad132e0cb762f36584e57f83f764bf296393745a766dd7e2bb89981db7ee77e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3580
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage D3 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-06-10 — GenBank