Protein

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Genbank accession
YP_009824934.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAEEIKIYGAKGGSQKQHQPVEQEDNLISLNKVKVLLAVADGEVDPNFSLKDLYLADVPVQNQNGTYNYEGVRAEFRAGTQYQDYIAGLDGANSEIQASREITNDTPYIIAVNNSQLSAIRVKLFWPRLIKQESNGDLNGTTCEYAIDLSVNGGAYQQYTRGVANGKTTTGYDRSIRVNLPAEFDSALVRIRKITADSTSSTLVNGMQITTYQEVIDAKFRYPLTALVYVEFGSDLFPNGIPTISIKKRWKLIQVPTNYNPESRTYSGTWNGLFKMAWSNNPAWVLYDLVTNRRYGLDQRELGVEIDKWGLYEAAQFCDQMVPDGKGGMEPRYLCDMVVQNKVEAYTLIRDVCSIFRGLTFYDGEKIGIVVDKPRNPSYIFTNDNVVNGLFSRTFASEKSLYTTANVQFDDVENNYQQDVEPVFELEATRRFGFNPVDLTAIGCTRRSEANRRGRWLLKTNLRSETISFTTGLEGMIPMIGEVIAVNDAAWSSNYQLNLSGRIESVQGLQVFTPFKVDAAPGDRILLNKPDGSPEARTIASVSEDGRTINLNTAFSFVAQQDTVFAIDKDNLALQQYVVTGIQKADTDGQDSFQYTITAVEYDPNKYDEIDYGVNIIDRPTSIVEPDRLSPPENLTVSSYSKVVQGLSVETMVIGWDKAPYAKTYNVQWRKENGNWINVPRTASTEVDIEGIYAGIYDVRVRSVSDTENVSAWSDIVTVSLTGKIGRPSAPTVITASTDEVFGIRVKWGFPEGSGDTAYTELQQVADNGDGTYNPDNASLLTLLPYPAYEYWHTPIQPGKVIWYRARLIDRIGNTSDWSDFARGMSTDDANIINEYIKVDIEGSEGFKYLEQNAIQKNQDIQNQAEAIIENALANDTDVRRMTKENGARKAEYVQAVNLIADETQARVEALTQLKAQIDGEVVASITEVQTALATETEARTTADTALRAQLGDTQAALNEKLDSWVDAESAGAQYGVKLGLKYNGVEYSAGMSMELVGSGTGVKSQFIFDANRFAISNGIGSGSGQWSLPFVVESNQVFIQSAVIKDGSITNAKIGNRIQSNNYVQGSQGWAIDKSGFAELSNATVRGSLYANNGNFAFNGTGNTVQINGNGITVNLPGGGMVVVGVWS
Physico‐chemical
properties
protein length:1129 AA
molecular weight: 124486,22190 Da
isoelectric point:4,71783
aromaticity:0,09477
hydropathy:-0,34500

Domains

Domains [InterPro]
DC_0014
STR
1–1128
DC_0014
IPR053171
Unmapped
6–886
IPR053171 IPR015406
IPR055385
ATT
93–218
IPR055385 IPR032876 IPR036116 Coil
IPR013783
STR
630–724
IPR013783
IPR003961
STR
631–725
IPR003961
YP_009824934.1
1 1129
Architecture
STR
ATT
STR
ATT
STR
STR 1-92 | ATT 93-218 | STR 219-342 | ATT 343-489 | STR 490-1128 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009824934.1
1 1129
Domain Start End Length (AA) Confidence
N-terminal 1 510 510 0,9371
Central domain 511 1061 552 0,0325
C-terminal 1062 1129 67 0,5392
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-510
Central
511-1061
C-terminal
1062-1129

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_IME542
[NCBI] 		2507711 Uroviricota > Caudoviricetes > Drexlerviridae > Christensenvirus > Christensenvirus IME542
Host Escherichia coli BL21(DE3)
[NCBI] 		469008 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009824934.1 [NCBI]
Genbank nucleotide accession
NC_048208 [NCBI]
CDS location
range 35983 -> 39372
strand +
CDS
ATGGCTGAAGAAATTAAGATTTATGGTGCCAAAGGCGGTAGCCAGAAGCAGCATCAACCAGTGGAGCAGGAAGATAACCTAATTTCACTTAACAAGGTTAAGGTATTACTTGCGGTTGCTGACGGAGAGGTGGACCCTAACTTCTCATTGAAGGATTTATACCTTGCTGATGTTCCAGTGCAAAATCAGAATGGCACCTACAACTATGAAGGTGTTCGCGCCGAGTTTCGCGCTGGTACGCAATATCAGGACTATATCGCTGGGCTTGACGGTGCGAACTCAGAGATTCAGGCTTCCAGGGAAATTACGAACGATACCCCGTACATCATTGCGGTTAATAACAGCCAGCTTTCGGCGATTCGAGTTAAACTCTTTTGGCCTCGACTGATCAAACAAGAAAGTAACGGAGACCTGAATGGCACAACTTGCGAGTATGCAATTGACTTGTCAGTTAATGGTGGGGCATATCAGCAATATACTCGCGGAGTTGCAAACGGGAAAACAACAACTGGTTACGACCGTAGCATACGTGTAAACCTTCCCGCTGAATTTGATAGTGCGCTGGTTCGCATCCGTAAGATTACAGCAGACTCAACAAGTAGCACGCTGGTTAATGGAATGCAGATTACAACCTATCAGGAAGTAATTGACGCTAAATTCCGCTATCCGCTTACTGCTCTGGTTTACGTTGAGTTCGGCTCTGACCTGTTCCCTAACGGAATCCCAACAATCTCTATCAAGAAGCGATGGAAGTTAATTCAGGTCCCAACAAACTATAACCCTGAAAGCAGAACTTACAGCGGCACATGGAATGGTTTATTTAAAATGGCGTGGTCAAATAACCCAGCATGGGTTCTTTATGACTTAGTGACAAACCGCAGATATGGACTTGACCAGCGAGAGTTAGGTGTAGAGATTGATAAGTGGGGCTTGTATGAAGCTGCACAATTCTGCGACCAGATGGTTCCAGATGGTAAAGGTGGAATGGAACCTCGTTATCTTTGCGATATGGTTGTACAGAATAAGGTTGAGGCATACACACTAATTCGTGATGTCTGCTCAATATTCCGCGGCCTGACATTCTATGATGGCGAAAAGATTGGCATCGTAGTTGATAAGCCTCGCAATCCATCTTACATCTTCACGAACGATAACGTTGTAAATGGATTATTCAGCCGCACATTCGCTAGCGAAAAGAGTCTTTACACTACTGCGAACGTACAGTTTGATGATGTGGAGAATAACTATCAGCAAGATGTAGAGCCGGTATTTGAATTAGAGGCAACCCGCCGCTTTGGATTTAACCCTGTTGATTTAACTGCTATTGGCTGCACTCGCAGAAGTGAAGCAAACAGGCGCGGAAGATGGCTTCTAAAAACCAACCTGAGAAGCGAAACTATCAGCTTCACAACTGGGTTAGAAGGTATGATTCCGATGATTGGCGAGGTTATTGCGGTTAATGACGCAGCATGGTCGAGCAACTATCAGTTAAACCTTTCTGGTCGAATCGAATCTGTGCAAGGATTGCAGGTTTTTACTCCGTTTAAAGTTGATGCAGCACCTGGTGACAGAATCCTGCTTAACAAACCGGACGGTAGCCCAGAGGCTAGAACTATCGCAAGCGTATCTGAAGATGGTAGAACTATTAACCTGAACACGGCGTTCAGTTTTGTAGCTCAGCAAGATACTGTTTTCGCAATCGACAAGGACAATCTGGCACTTCAGCAATATGTTGTGACTGGTATTCAAAAAGCAGATACTGATGGTCAGGACTCGTTCCAGTACACAATTACTGCTGTTGAGTACGACCCGAACAAATATGACGAGATTGACTACGGAGTTAACATTATAGACCGCCCTACTTCAATTGTAGAACCTGACAGATTGTCGCCACCTGAGAACTTAACAGTATCAAGCTACAGCAAGGTTGTTCAGGGTTTATCGGTTGAGACGATGGTAATAGGGTGGGACAAAGCGCCATACGCTAAAACATACAATGTTCAGTGGAGGAAAGAGAATGGTAACTGGATTAACGTACCCAGAACAGCTAGCACAGAAGTTGATATTGAAGGTATTTACGCAGGAATCTATGACGTTAGGGTTCGCAGCGTATCAGATACTGAAAACGTCTCTGCCTGGTCTGATATTGTAACTGTATCGCTAACTGGCAAGATTGGTCGCCCATCTGCGCCAACCGTTATTACTGCTTCAACTGATGAGGTGTTTGGCATTCGTGTTAAATGGGGATTCCCTGAAGGCTCAGGCGACACAGCTTACACTGAACTTCAGCAAGTTGCTGATAACGGTGACGGTACTTACAACCCTGATAACGCGAGCTTGCTGACGCTGCTTCCTTATCCAGCCTATGAATACTGGCACACGCCAATTCAGCCAGGCAAGGTTATCTGGTATCGTGCAAGATTAATTGACAGAATCGGCAACACCTCTGACTGGTCTGATTTCGCTAGAGGTATGAGCACTGACGATGCCAACATTATCAACGAATATATCAAAGTTGACATTGAAGGTTCGGAAGGATTCAAATATCTCGAACAGAATGCGATTCAAAAGAATCAGGACATTCAGAATCAGGCTGAGGCAATCATCGAGAACGCATTAGCAAATGACACTGATGTTCGCCGCATGACAAAGGAGAATGGTGCCAGAAAGGCTGAATACGTTCAGGCGGTGAATCTTATTGCTGATGAAACTCAGGCGCGCGTAGAGGCTCTCACGCAGCTTAAAGCGCAGATTGATGGTGAGGTTGTAGCTTCCATAACTGAGGTTCAGACGGCACTAGCCACCGAAACAGAAGCAAGGACCACTGCCGATACTGCTTTGAGAGCTCAGCTTGGAGATACTCAGGCTGCACTTAATGAAAAACTTGACTCATGGGTTGATGCGGAATCCGCTGGCGCTCAGTACGGTGTTAAGTTAGGTCTAAAATATAATGGGGTTGAGTATAGCGCAGGGATGAGCATGGAGCTTGTTGGCAGTGGTACTGGCGTTAAGAGTCAGTTCATCTTTGACGCAAACAGATTCGCTATCAGTAACGGGATTGGATCTGGTTCCGGTCAGTGGTCATTGCCTTTTGTTGTTGAGAGCAACCAGGTGTTCATCCAGAGCGCCGTGATCAAGGATGGATCAATCACTAATGCCAAGATTGGTAACAGAATTCAATCAAATAACTACGTTCAAGGAAGTCAGGGGTGGGCTATTGATAAATCTGGTTTTGCTGAACTAAGTAATGCCACCGTTAGAGGAAGCCTTTACGCTAACAATGGTAACTTCGCGTTTAACGGAACAGGCAACACTGTTCAGATTAACGGTAACGGAATCACTGTTAACCTACCAGGTGGAGGAATGGTTGTAGTTGGAGTATGGAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5f0d0b9527a8977f1570a1946e1f100264fe9975e837e5d6e7bf95c2e0159fdc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7714
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The whole genome sequence of IME542 Li,P., Tong,Y. and Wang,J. 2009-07-27 — GenBank