Protein

View in Explore
Genbank accession
YP_009056509.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
TSP
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MENSKHVYFIDFEKHGIRSNGTAARETTDGFISALNDAVASGYKTVYVPKGNYLIDGVGEDKMPEYGGGIQFPSNIEVIFHKEAVFKVEPNSSTGYACFNLENVDNVILRGGCVVGERFEHDYDMNVSPFRRTHEWGYGVHIRGCRNILIEDMHISDCTGDCIWVPAHGMMNWGDTVYIPSESITIRKCRTEKGRRNNIATDGCLGLLIDDCDIIKAGGDTIGPQLGIDLEGYAEDGIKYGHPYEINITNCRFRKNGRGALNINVSAKVHATNNFSDDVFSYGYSSDVSICNNKIINDSGTVKKYGIDSIRKSSTETGNRAIISGNHVIGFEIGICARGLGVKISNNYLKDISSIGIYPYLAEEVSVSDNIIDSNCLHVWVRESKDVKISDNKTKGAANYFAYRVEASSDVIISDSKSQSKGGIQVLRSRKVVLKDNDLALIGTDYGIHWDKQSEVEVLHNTVRDAAMIAIAGNSELYPSIIKGNNIKDCTYLVGLYVNGGSDHILWDNDVSFKGTGSANGGYGVQLVGTENAWLMNNKVRVSNGRTLSSSYESRGSQNTMYINNALQTGKLNSHESDYVNGIIELPFSTQ
Physico‐chemical
properties
protein length:591 AA
molecular weight: 64944,90940 Da
isoelectric point:5,69938
aromaticity:0,08629
hydropathy:-0,33367

Domains

Domains [InterPro]
IPR012334
STR
15–335
IPR012334 IPR006626 IPR011050
IPR011050
STR
28–396
IPR011050 IPR006626 IPR006626 IPR006626 IPR006626
IPR039448
ENZ
136–274
IPR039448 IPR006626 IPR006626 IPR039448
IPR006626
Unmapped
145–167
IPR006626 IPR006626 IPR006626 IPR006626 DC_0453
IPR006626
Unmapped
384–428
IPR006626
IPR012334
STR
394–582
IPR012334
YP_009056509.1
1 591
Architecture
STR
STR 15-585 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009056509.1
1 591
Domain Start End Length (AA) Confidence
N-terminal 1 23 23 0,7620
Central domain 24 580 558 0,9908
C-terminal 581 591 10 0,5541
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-23
Central
24-580
C-terminal
581-591

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage Bobb
[NCBI] 		1527469 Uroviricota > Caudoviricetes > Herelleviridae > Agatevirus > Agatevirus bobb
Host Bacillus pumilus
[NCBI] 		1408 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009056509.1 [NCBI]
Genbank nucleotide accession
NC_024792.1 [NCBI]
CDS location
range 154813 -> 156588
strand +
CDS
TTGGAGAATAGCAAACACGTCTATTTCATTGACTTTGAAAAACACGGTATCAGATCAAATGGAACAGCAGCAAGAGAGACAACAGACGGATTCATTTCCGCACTAAACGACGCTGTAGCTAGCGGGTACAAAACTGTATACGTCCCTAAAGGTAACTATCTGATTGACGGAGTCGGAGAAGACAAGATGCCGGAATATGGTGGAGGTATTCAATTCCCCTCGAACATCGAAGTCATCTTCCATAAAGAGGCAGTTTTTAAGGTTGAACCTAACAGCTCTACAGGTTATGCCTGCTTCAACTTGGAGAATGTCGACAATGTCATCCTGAGAGGCGGCTGCGTGGTCGGAGAGCGCTTTGAACACGATTATGATATGAATGTATCCCCGTTCCGTAGAACCCACGAGTGGGGCTATGGAGTGCATATACGAGGATGTAGAAATATTCTTATTGAAGACATGCACATTTCAGACTGTACTGGAGATTGCATATGGGTCCCAGCACACGGTATGATGAACTGGGGAGACACAGTATATATTCCATCAGAGTCGATCACGATTAGAAAGTGCCGCACTGAAAAGGGACGTAGAAACAACATTGCTACAGACGGATGCCTAGGTCTCCTAATTGACGACTGTGACATCATCAAAGCTGGCGGAGATACAATTGGACCGCAGCTAGGTATTGACTTAGAAGGTTATGCAGAAGACGGAATTAAGTACGGACACCCTTATGAAATTAACATCACTAATTGCCGCTTCCGTAAGAATGGACGGGGCGCCCTCAACATAAACGTATCTGCGAAGGTTCATGCTACAAACAACTTCTCAGATGACGTTTTCAGCTATGGCTATTCTTCAGACGTTTCCATCTGTAACAACAAAATCATTAATGACTCCGGAACTGTGAAAAAATACGGGATAGACTCTATTCGTAAGTCCAGCACTGAGACCGGTAACCGAGCTATCATATCCGGTAACCACGTCATCGGATTCGAGATTGGTATTTGTGCTCGTGGACTAGGAGTAAAAATATCTAATAACTACCTAAAAGATATTTCTTCTATAGGTATTTATCCCTACTTAGCAGAGGAAGTTAGCGTTTCCGATAACATTATTGATAGTAATTGCTTGCATGTATGGGTACGTGAGTCTAAAGATGTAAAAATTAGCGACAACAAGACTAAAGGCGCAGCTAACTATTTTGCATACCGGGTTGAAGCTTCTTCCGATGTCATCATATCAGACAGCAAGTCACAATCCAAAGGCGGCATCCAAGTCCTTCGATCCCGTAAAGTCGTACTGAAAGATAACGACCTTGCCCTAATCGGAACAGACTATGGAATCCACTGGGACAAACAGTCTGAAGTAGAGGTACTACACAACACAGTAAGAGACGCAGCTATGATCGCTATTGCAGGTAACTCCGAGCTCTACCCAAGTATCATCAAGGGAAACAACATCAAAGACTGTACATACTTAGTAGGCTTGTATGTGAACGGCGGCAGCGACCACATCTTATGGGACAACGACGTATCTTTCAAAGGCACAGGTTCAGCAAACGGAGGTTACGGCGTCCAGCTAGTCGGAACAGAAAACGCATGGCTTATGAACAACAAAGTACGTGTATCCAACGGAAGAACACTAAGCAGCTCTTACGAGTCCCGTGGATCACAGAACACAATGTATATCAACAACGCATTACAGACAGGGAAACTTAATTCCCACGAGAGCGATTACGTAAACGGAATAATAGAACTCCCTTTTTCTACTCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1a5b452cb2fc0faf4161d26361f1f6fc1b7beb242e67f69df654f7cbe9c019b6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8886
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bioinformatic genomic analysis of Bacillus phage Bobb Lewis,H.M.N., Temple,L., Barth,R.N., Bowles,K.M., Churchin,D.I., Scott-Croshaw,C., Glasgow,G.H., Gloe,M.W., McGough,T.M., Nutbrown,S.A., Romulus,S.R., Sanders,K.A.M., Diachok,C.R., Serigano,J.P., Shin,D., Suresh,M.H., Conner,A.R.N., Korba,R.M., Livermore,R.J., Rohlf,M.B., Utterback,S.D. and Wilson,V.E. 2015-07-03 — GenBank