Protein

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Genbank accession
XAQ48626.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,56
Protein sequence
MADLGAIGASYGLGSLRGPNPSAYSSYARPSARQTAVPSPRPLMGRGFVRYRVPTAVPGTPSWAGGPRPVGAEPAAVYAVGGTVKQRLNGVDSPLANCLVRLYARRTGMPAGAALTGLDGSFRVGNLLPETAGFFAIAFDPDGAPVQNALIFDRLQALPSVPGRIRNSAPSFTVDVAVSLQLTTAYLVGAPAFSVSSGALPDGVALSSSGLLSGTPTTDGEAYSFTITATGSIYGTASVTWSGEVAGGIGYLNTLNGRTGLNNVWSGQVDDSNTVLPALPFQFPLFGLTFQNNIYISSNSHVDFGFGSSAYSGLSPTNPGRALLINAADRSYQNVFAGPVLSGACFLIRYEGSSNTGNSNDNLWEVGLYNDGSITVVTGTVPGSSSPNGAGTSNISDGTAWRSVTPPTFLSNRAYLGQPTGPGGDFVWTEITP
Physico‐chemical
properties
protein length:433 AA
molecular weight: 44470,02040 Da
isoelectric point:5,87314
aromaticity:0,09469
hydropathy:0,02379

Domains

Domains [InterPro]
DC_0374
STR
1–161
DC_0374 IPR015919 DC_0792
DC_2153
STR
154–249
DC_2153
IPR013783
STR
155–245
IPR013783
XAQ48626.1
1 433
Architecture
STR
RBD
STR 1-249 | RBD 250-433
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAQ48626.1
1 433
Domain Start End Length (AA) Confidence
N-terminal 1 374 374 0,7188
Central domain 375 422 49 0,5107
C-terminal 423 433 10 0,1905
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-374
Central
375-422
C-terminal
423-433

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage vB_XeuM-YB23
[NCBI] 		3144279 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas euvesicatoria
[NCBI] 		456327 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAQ48626.1 [NCBI]
Genbank nucleotide accession
PP756300 [NCBI]
CDS location
range 42367 -> 43668
strand +
CDS
GTGGCCGACCTGGGCGCAATTGGCGCTTCGTACGGGCTGGGGTCGCTCCGCGGGCCCAACCCCTCGGCCTACAGCAGCTACGCCCGACCCTCGGCGCGGCAGACGGCCGTGCCGTCACCTCGGCCCCTCATGGGGCGGGGCTTCGTGCGCTACAGGGTGCCGACGGCCGTGCCGGGCACCCCGTCCTGGGCCGGAGGTCCGAGGCCCGTCGGCGCCGAGCCGGCCGCGGTGTACGCGGTCGGCGGCACGGTGAAGCAGAGGCTAAACGGCGTGGACTCGCCGCTGGCGAACTGCCTGGTGCGCCTGTACGCCAGGCGGACCGGCATGCCCGCCGGCGCGGCCCTGACCGGCCTGGACGGATCCTTCAGGGTCGGCAACCTGCTGCCCGAGACCGCCGGGTTCTTCGCGATCGCCTTCGACCCCGACGGTGCCCCGGTCCAGAACGCCCTGATCTTCGACAGGCTGCAGGCCCTGCCGAGCGTGCCGGGCCGCATCCGCAATTCCGCGCCGAGCTTCACCGTCGACGTGGCGGTGTCCTTGCAGCTCACCACGGCGTACCTGGTCGGCGCCCCGGCGTTCTCGGTCAGCTCCGGGGCCCTGCCCGACGGAGTCGCCCTCAGCTCCTCGGGCCTGCTGTCTGGCACCCCGACGACCGATGGCGAGGCCTACTCGTTCACCATCACCGCCACCGGCTCCATCTACGGCACGGCCTCGGTGACCTGGTCTGGCGAGGTCGCCGGCGGTATCGGCTACCTGAACACGCTCAACGGCCGTACCGGCCTGAACAACGTCTGGTCCGGCCAGGTGGACGACAGCAACACCGTGCTGCCGGCGCTGCCGTTCCAGTTCCCGCTGTTCGGCCTGACGTTCCAGAACAACATCTACATCAGCTCCAACAGCCACGTGGACTTCGGCTTCGGGTCGAGCGCGTACTCTGGGCTGTCGCCCACCAACCCGGGACGGGCGCTGCTCATCAACGCGGCCGACCGGTCCTACCAGAACGTCTTCGCCGGGCCCGTGCTGTCTGGCGCCTGCTTCCTGATCCGATACGAGGGCTCCTCCAACACTGGCAACAGCAACGACAATCTGTGGGAGGTCGGCCTCTACAACGACGGCAGCATCACGGTCGTCACCGGCACGGTGCCAGGCAGCTCGTCGCCGAACGGCGCGGGCACGTCCAACATCTCGGACGGCACCGCCTGGCGCAGCGTCACGCCGCCCACCTTCCTCAGCAACAGGGCCTACCTCGGTCAGCCGACCGGGCCTGGGGGCGACTTCGTATGGACGGAGATTACGCCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c40d7b16b9957d85b263af1d7fa4cde25e7efc0d104484b6039f204ade523735
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7510
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
complete genome sequence of Xanthomonas phage vB_XeuM-YB23 Kim,Y.B., Park,E.J. and Kim,J.H. 2021-01-07 — GenBank