Protein

View in Explore
Genbank accession
XCO41088.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MLNDFNQPKGSTIGVLKDGRTIQQAFDEIPVISVLRFGAKGDGVADDYPAFQRAALEAQRIGGAVIDIPTPPVEYKIGFPVFLFDRTWFRGTGINCRVNFTDPLYARKSRSGFIIGSGYEQNRDKAIQCLNDGTWATTGSVVNSAFTELPRGQYVRDNPSQVQSRLCRVSDMYLVATYPNGTTLKGGYAVSGANAVDSDVFNIWGEGWTEIINFGSDVPPATPSCHNLHAYDITCVEPNHYETYYSAGFMANSTNCSIGRFRQLKPIADGSPHGSGGSMNYTEFCSFYDIDIPSLGRTASSEGILVNNSKGAVTRNIRIGNAKTCVAEYYTTGAGIFYDQAHPNVFDGIHANNCDNAVALRSKFSVWKNVTQTNCTYHVYFGTTNAQSCVVKFVPDSIGFGSGVDGLARLRDNRVNGYIERSVYVRPINFLLEDKTVLQSWDTNRNMKAKPDVGFRVLYPIPVNMRAIVSVNQFFTFEVGAGSKGSNVDIKVRRMASFGGNANEQPVIEFSNSKTATVDTVQDANVQANAPALVLTATPDMPNSMDVLITVSNPTLNMNLKEFRLVYLGD
Physico‐chemical
properties
protein length:570 AA
molecular weight: 62406,39040 Da
isoelectric point:6,41300
aromaticity:0,10526
hydropathy:-0,22246

Domains

Domains [InterPro]
DC_0953
STR
1–479
DC_0953
IPR012334
STR
5–177
IPR012334
IPR011050
STR
30–378
IPR011050
XCO41088.1
1 570
Architecture
STR
STR 1-479 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCO41088.1
1 570
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,9631
Central domain 44 428 386 0,9921
C-terminal 429 570 141 0,9517
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-428
C-terminal
429-570

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage phi1_146049
[NCBI] 		3232228 Viruses >
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO41088.1 [NCBI]
Genbank nucleotide accession
PP889498 [NCBI]
CDS location
range 38246 -> 39958
strand +
CDS
ATGCTGAACGACTTCAACCAGCCGAAAGGCTCAACCATTGGTGTGCTCAAGGATGGGCGCACTATCCAGCAGGCATTCGATGAGATTCCGGTAATATCCGTGCTGCGCTTCGGGGCAAAAGGGGACGGGGTCGCTGACGACTATCCGGCTTTCCAACGAGCAGCACTTGAGGCTCAGCGAATTGGAGGGGCGGTAATCGACATCCCAACGCCACCTGTGGAGTACAAGATTGGGTTCCCTGTGTTCCTGTTCGACCGCACTTGGTTCCGTGGCACAGGCATTAACTGTCGCGTGAACTTTACGGACCCGTTGTATGCTCGCAAGAGCCGCAGTGGGTTCATCATTGGCAGTGGCTACGAGCAAAACCGAGACAAGGCCATTCAGTGCCTTAACGATGGCACATGGGCCACGACTGGGTCTGTGGTAAACTCAGCGTTCACTGAGCTTCCTCGTGGACAGTATGTGCGAGATAACCCATCACAGGTTCAGAGCAGACTGTGCCGAGTGTCTGACATGTACCTAGTCGCTACGTACCCTAATGGAACAACCTTGAAAGGTGGCTATGCGGTGTCTGGTGCCAACGCTGTGGATAGCGATGTATTCAACATTTGGGGCGAGGGCTGGACCGAGATTATCAACTTTGGTTCTGACGTTCCACCAGCTACGCCAAGCTGCCACAACCTCCACGCGTATGACATCACGTGTGTCGAGCCTAACCACTACGAGACATACTACAGTGCAGGGTTTATGGCCAACTCCACGAACTGCTCCATCGGTCGATTCCGTCAGTTAAAACCTATTGCTGACGGTTCGCCTCACGGTTCTGGCGGCTCAATGAACTACACTGAGTTCTGCTCGTTCTATGACATTGACATCCCAAGCCTTGGCCGTACAGCCTCCTCTGAGGGCATCCTTGTCAACAACTCGAAAGGAGCGGTCACCCGTAATATTCGCATCGGTAACGCTAAGACATGCGTGGCTGAGTACTACACCACTGGGGCTGGTATCTTCTACGACCAAGCTCACCCGAACGTCTTTGATGGAATCCATGCGAACAACTGCGACAACGCTGTGGCGCTGCGCTCTAAGTTCTCCGTATGGAAGAACGTTACGCAGACCAATTGTACGTACCACGTGTACTTCGGTACGACTAACGCCCAGTCGTGTGTTGTTAAGTTCGTCCCTGACTCCATCGGGTTCGGCTCTGGTGTTGACGGTCTGGCCCGACTCCGCGATAACCGTGTTAATGGTTACATCGAGCGCTCCGTGTATGTTCGTCCGATTAACTTCCTATTGGAAGACAAGACGGTCCTACAGAGCTGGGACACCAACAGGAACATGAAGGCTAAGCCTGATGTGGGTTTCCGTGTGCTGTATCCGATTCCGGTGAACATGCGGGCCATTGTCAGCGTAAACCAGTTCTTCACGTTTGAGGTCGGTGCCGGGTCAAAAGGTTCCAACGTGGACATTAAGGTGCGCCGTATGGCATCCTTTGGTGGTAACGCCAATGAGCAGCCAGTCATTGAGTTCTCTAACTCTAAGACTGCCACAGTGGACACCGTACAGGATGCTAACGTACAGGCCAACGCACCTGCGCTCGTCCTAACTGCGACCCCTGACATGCCCAACTCTATGGATGTCCTCATTACGGTGAGCAACCCGACCCTCAACATGAACCTCAAGGAGTTCCGACTGGTCTACCTTGGGGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f2e5ef8498fed75d5dcf2542abe8bd1496198e3c85fe910740e19b7446a09df
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6778
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome of Klebsiella pneumoniae phages Fang,Q., Luo,H., Feng,Y. and Zong,Z. 2016-02 — GenBank