Protein

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Genbank accession
BFJ60534.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TF
Evidence RBPdetect
Probability 0,65
Protein sequence
MAYTLLKECTVVLIYKGVGYHFDALTQLDFSQTFNKTSGSRKTLHSKRAKPYTFANSKNSATFSLSILGTQSFAEGVLFELAGLTKIHNSVYSYEDNLNISPEICDIFLVTTEGVYKVKTAALESLSISLSLSEALTFETSFTASSIDKVPSIDLSAGMVEQGTPLKPTPIQYKLDNEIRNSIINAGISIQQTISWREDRSLHDAGSLYIPKHPVLTDRSFGINTNVYLNTIHPTPDKSHYSNLELYKSGLLCSMKDALVTHRVAPADVFTEAHDIRVTDQTNKIIVEYGGYLV
Physico‐chemical
properties
protein length:294 AA
molecular weight: 32535,51260 Da
isoelectric point:6,13585
aromaticity:0,09184
hydropathy:-0,11088

Domains

Domains [InterPro]
IPR056389
1–292
IPR056389
BFJ60534.1
1 294
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VF16
[NCBI] 		3137795 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BFJ60534.1 [NCBI]
Genbank nucleotide accession
LC811684 [NCBI]
CDS location
range 102337 -> 103221
strand -
CDS
ATGGCATACACTCTACTAAAAGAGTGCACCGTTGTTTTAATCTATAAGGGTGTAGGGTATCATTTCGATGCCCTAACCCAGCTTGATTTTAGTCAGACATTTAATAAAACTTCTGGTTCAAGAAAAACATTGCACTCAAAACGAGCAAAACCGTATACTTTTGCTAATTCTAAAAATTCGGCTACGTTCAGTCTAAGCATTTTAGGTACTCAAAGCTTTGCAGAAGGTGTTTTGTTTGAACTAGCAGGATTAACCAAAATACATAATAGCGTGTATAGTTATGAGGATAATTTAAATATATCTCCAGAGATATGTGACATATTCTTAGTTACTACTGAAGGGGTATACAAAGTAAAAACAGCAGCATTAGAGTCTTTAAGTATATCACTCTCGTTAAGTGAAGCACTTACTTTTGAAACCTCGTTCACTGCTAGCTCTATTGATAAGGTTCCTAGTATTGATTTAAGTGCAGGAATGGTAGAGCAAGGTACGCCCCTAAAACCTACACCTATACAATATAAATTAGATAATGAGATAAGAAATTCTATTATAAATGCAGGAATCTCGATACAACAAACTATAAGTTGGAGAGAAGACAGATCACTTCATGATGCAGGTAGTTTATACATTCCTAAACACCCTGTACTAACAGACAGAAGTTTTGGTATTAATACTAATGTATACTTAAATACCATACACCCAACTCCTGACAAATCTCACTATTCTAATTTAGAGTTATATAAATCAGGTTTACTATGCTCTATGAAGGATGCATTAGTAACCCATAGAGTTGCCCCTGCTGACGTTTTTACTGAAGCACATGATATAAGGGTAACAGATCAAACAAATAAAATAATTGTGGAATATGGAGGATATTTAGTATGA

Tertiary structure

PDB ID
b9a8e22413aad011be2d03d8608c44cedea918f572a6779e138bd014af8d9ee5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8152
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Combination of a novel bacteriophage and D-serine effectively controls Vibrio parahaemolyticus growth in seafood Miura,D., Yamaki,S., Tabuchi,I., Kawai,Y. and Yamazaki,K. 2024 — GenBank