Protein

View in Explore
Genbank accession
URQ08896.1 [GenBank]
Protein name
Ig-like virion protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,68
Protein sequence
MPTITVLVAPEVVRNKPETERNHVVTGVAKGWQKTSLNQDPDEILTECKGLDALLTKSNLQADGVTKVDPTKPIGFQVSYEIHDPNAILTTGLVITPATASGEIGQFVELLATVSPANATYQGVNWYSGDITKAVHVGGGKFKLLASGTVTVYGVTVEGNHTDSTVITVAGALSLSTDLPATKDVTSGQDGTFSVVAAGGTTPYTYVWHFSDTPGGAGSVIDAGTNATAATANLVITAVEAANEGEYWCVVSDADGHSVTSTRCEMAVV
Physico‐chemical
properties
protein length:269 AA
molecular weight: 27825,74120 Da
isoelectric point:4,63820
aromaticity:0,05948
hydropathy:0,05390

Domains

Domains [InterPro]
DC_0078
STR
1–193
DC_0078 cd00096
G3DSA:2.60.40.1080
STR
87–170
G3DSA:2.60.40.1080 IPR013783
IPR008964
RBD
88–166
IPR008964 DC_2066
IPR007110
STR
164–260
IPR007110
IPR036179
RBD
179–263
IPR036179
IPR003599
STR
180–269
IPR003599
PF13927
STR
182–252
PF13927
URQ08896.1
1 269
Architecture
STR
STR 1-269
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage BRM 13312
[NCBI] 		2654654 No lineage information
Host Salmonella enterica subsp. enterica
[NCBI] 		59201 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URQ08896.1 [NCBI]
Genbank nucleotide accession
ON169961 [NCBI]
CDS location
range 46784 -> 47593
strand -
CDS
ATGCCAACAATCACAGTATTAGTCGCACCGGAAGTTGTCCGCAACAAACCCGAAACCGAACGCAATCATGTCGTGACGGGTGTTGCAAAGGGTTGGCAAAAGACCAGCCTCAACCAAGATCCTGATGAGATCCTGACCGAATGTAAAGGTCTTGACGCTCTGCTCACCAAGAGCAATTTACAAGCGGACGGTGTCACCAAAGTGGATCCCACCAAGCCTATCGGCTTTCAAGTATCTTATGAAATCCACGATCCGAATGCTATTTTAACCACCGGACTTGTGATTACTCCAGCTACAGCCAGCGGAGAGATCGGACAATTTGTTGAATTGCTAGCGACGGTATCCCCTGCCAATGCCACATATCAAGGCGTTAATTGGTATTCTGGTGATATTACGAAAGCTGTACATGTCGGTGGTGGTAAATTCAAATTGCTGGCTTCAGGAACTGTAACGGTTTATGGTGTCACGGTTGAAGGGAATCACACAGATTCTACGGTTATTACAGTTGCAGGCGCTCTATCGCTGTCGACTGATTTACCTGCCACCAAAGACGTGACTTCTGGACAAGACGGAACCTTTAGTGTTGTTGCTGCGGGCGGTACAACTCCATACACTTATGTGTGGCATTTCTCTGATACTCCTGGGGGTGCGGGGTCAGTTATCGATGCTGGCACTAATGCCACCGCCGCCACTGCTAACCTGGTTATCACAGCAGTTGAAGCCGCAAATGAAGGCGAATATTGGTGTGTTGTTTCTGATGCAGATGGCCATTCTGTCACGTCTACTCGTTGTGAAATGGCTGTGGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a2dc62f465c50d4a1d94a30f16b97a6621658dcf9ba35cff71be7d8f2e399ec8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7301
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization, comparative genomic analysis and efficiency of wild-type bacteriophages on the reduction of Salmonella Heidelberg colonization in broiler chickens Vaz,C.S.L., da Fonseca,F.N., Voss-Rech,D., Mores,M.A.Z., Coldebella,A. and Cantao,M.E. 2024-05 — GenBank