Protein

View in Explore
Genbank accession
QFR58941.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MALIYHYTRNEDGTFNVVRYRDNPMNFVVNNVPDGVPIRIFIDEICEDNDVTEDFDALKEDAIFYIVESAGGGVVKGVMKIFSVILKPLAKLLSPSAKGLSSNFANSQADSPNNSLTDRNNKPRPYERSYDICGTVQTVPNNLMTTYKIFNDTGRIIEYGYYDAGRGHLDIKAEDVTDGDTRVQDIDGSSVAIYAPYTSPNNTSTPQLQIGEVIDQQLYTTIESNEIDGITLRAPNDLGVTFSGETAVVTLSGTTGRITETAGGVDFTEDFSVGDIANLNAWTTNTVNIGDHYTVTSVSETVIELDVSSRLLSWSSASGNPIRGSDGENSIRPTDTLDKTLTDWVSINRSTVERIVVNIAAPNGMYKDNGSKLTMSATAEVQYQALDESGAPFGPIYTATGTITGRSSDYNGVTIYGYLPTASRVRVRARRTSDTDRGFNGTVSDEIVYANLYGQSVDTTPHYGNRTTVHSARKQTPRATEVRQPQLRMIATEMVFKYLGGGVFDTVMTPNRQAVQSLIRLARDPVVGGLDLSVANMDALLETQEEVESYFGSSDAGEFCYTFDDYKTTMQEIVTIIAEAIFCTPYRKGADILLDFERPRLGPEMVFTHRSKVKTSEKWSRTFNDPQVFDSLKFSYIDPVTNVKETISIPETGGLKTETYDSKGVRNKKQAYWLAHRRHQKNILRKVNVSFTATEEGIFARPNRPISVVKGSRMATYDGYITSVDGLTVHLSSPVQFTAGEPHSLVLKTRDGGAQSIPVIEGPDNRSVIMLSVPQEAIYTGNSALKTEFSFGSDSRHAAQMIMVSTVEPSDDRTVRITGFNYDADYYKYDGVSPFGRAFSDGFSNGFS
Physico‐chemical
properties
protein length:848 AA
molecular weight: 93374,84020 Da
isoelectric point:5,00032
aromaticity:0,09080
hydropathy:-0,36922

Domains

Domains [InterPro]
DC_0118
STR
1–681
DC_0118 DC_0808
NF040662
Unmapped
350–828
NF040662
QFR58941.1
1 848
Architecture
STR
RBD
STR 1-681 | RBD 699-842 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QFR58941.1
1 848
Domain Start End Length (AA) Confidence
N-terminal 1 226 226 0,9863
Central domain 227 425 200 0,5082
C-terminal 426 848 422 0,1735
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-226
Central
227-425
C-terminal
426-848

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella virus VSiA
[NCBI] 		2653661 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Infantis
[NCBI] 		595 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QFR58941.1 [NCBI]
Genbank nucleotide accession
MN393079.1 [NCBI]
CDS location
range 19262 -> 21808
strand +
CDS
TTGGCGCTGATATACCACTACACAAGAAACGAGGATGGTACTTTTAACGTGGTTCGATACCGCGACAACCCTATGAATTTTGTAGTAAATAATGTGCCTGATGGGGTTCCTATTCGCATATTTATCGATGAAATATGCGAAGATAACGACGTAACAGAAGATTTTGATGCGTTAAAAGAAGATGCAATCTTTTATATTGTTGAGTCTGCGGGGGGTGGCGTTGTAAAAGGGGTAATGAAAATATTCAGCGTCATCCTTAAACCACTTGCAAAGCTTTTAAGCCCATCGGCAAAAGGCTTATCTTCTAATTTTGCAAACTCGCAGGCGGACTCGCCAAACAATAGCCTTACAGACCGCAACAATAAGCCACGACCATATGAGCGCAGTTATGACATATGTGGCACGGTACAAACCGTACCGAACAATCTTATGACAACGTACAAAATATTCAATGATACGGGCCGCATCATTGAATATGGGTATTATGACGCCGGGAGAGGTCATCTCGATATAAAAGCTGAAGATGTTACTGATGGGGACACGCGGGTGCAGGATATTGACGGGTCGTCCGTCGCGATATACGCCCCGTACACATCACCTAATAACACATCAACACCACAGTTACAGATAGGAGAGGTTATAGACCAGCAGTTGTACACCACTATAGAGTCCAACGAGATAGACGGCATAACGCTTAGGGCCCCAAATGATTTAGGCGTAACATTCAGTGGAGAGACGGCAGTAGTTACGTTGTCAGGAACAACAGGAAGAATAACAGAAACTGCCGGTGGTGTTGACTTCACAGAAGATTTTTCTGTAGGCGATATCGCTAACTTAAATGCCTGGACAACTAACACCGTTAATATAGGAGACCATTACACTGTAACATCGGTGTCAGAAACAGTTATTGAACTGGACGTATCATCGAGGCTACTGTCTTGGTCAAGCGCAAGCGGCAACCCTATCAGGGGGAGCGACGGTGAAAATAGTATCAGACCAACGGACACGCTAGATAAAACATTAACGGACTGGGTGTCTATAAATAGGAGTACCGTAGAGCGCATAGTGGTTAATATCGCCGCGCCAAATGGTATGTATAAAGACAATGGCAGCAAATTAACGATGTCTGCGACCGCCGAGGTGCAATATCAGGCCCTGGATGAGAGTGGAGCGCCGTTCGGGCCCATATACACCGCCACGGGAACAATAACAGGTCGTAGCTCAGATTATAATGGAGTTACGATATATGGCTATCTACCGACCGCGTCCCGTGTCCGGGTTAGAGCGCGGCGCACATCAGACACCGATAGAGGTTTTAATGGCACCGTTTCGGACGAAATTGTATACGCTAACCTGTACGGTCAGTCTGTGGACACAACCCCACACTATGGTAATAGAACAACAGTACATTCGGCGCGAAAACAAACCCCCAGGGCGACGGAAGTTAGGCAACCACAGCTACGTATGATTGCCACCGAAATGGTATTCAAATACTTGGGTGGTGGAGTTTTTGATACGGTAATGACACCAAATAGACAAGCTGTTCAGTCTCTTATTCGGCTAGCGAGGGACCCGGTAGTTGGTGGTCTTGATTTATCTGTAGCTAATATGGACGCGCTTTTAGAGACTCAAGAAGAAGTCGAGTCGTATTTCGGTTCTTCTGATGCTGGCGAGTTTTGCTACACGTTCGATGATTATAAGACCACAATGCAGGAAATAGTTACCATTATTGCCGAGGCTATATTTTGCACTCCGTATCGAAAAGGTGCGGATATACTTTTAGATTTTGAACGTCCGCGATTAGGGCCGGAGATGGTGTTTACTCACCGCAGTAAAGTAAAAACGTCTGAGAAATGGTCACGAACATTCAATGACCCCCAGGTTTTTGACAGCCTTAAATTCTCGTACATAGACCCCGTAACAAACGTTAAGGAGACAATATCTATCCCTGAAACAGGAGGTTTAAAGACCGAGACGTACGACTCTAAAGGGGTTCGCAATAAAAAACAAGCATACTGGCTGGCGCACAGACGGCATCAAAAAAATATCTTACGCAAAGTTAACGTATCATTCACCGCAACCGAAGAAGGTATTTTTGCACGACCAAACCGCCCGATATCTGTGGTTAAAGGCTCGCGCATGGCTACTTATGATGGCTATATAACTTCAGTAGACGGTTTAACGGTTCACTTGTCGTCGCCAGTACAGTTTACCGCAGGGGAACCACATTCGCTGGTACTGAAAACTCGCGATGGTGGCGCGCAAAGCATTCCGGTAATAGAAGGGCCTGACAATCGTTCTGTAATAATGCTTTCAGTACCGCAAGAAGCCATCTATACTGGTAACAGCGCGCTGAAGACAGAATTTTCCTTCGGCAGCGATAGCCGCCATGCGGCGCAAATGATTATGGTCAGCACCGTAGAACCGAGCGACGATAGAACCGTGCGCATCACTGGGTTCAATTACGATGCCGATTACTACAAATACGATGGCGTTTCGCCATTTGGCCGCGCATTTAGCGACGGATTCAGCAACGGTTTTAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ec45c440ec8e5ab3ea33ae14d845dda84904feee133b54b4a2bee9d6ab39751c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8479
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Salmonella Infantis bacteriophage VSiA Denisenko,E., Kislichkina,A., Verevkin,V., Krasilnikova,V. and Volozhantsev,N. 2018-05-24 — GenBank