Protein

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Genbank accession
BAV81289.1 [GenBank]
Protein name
tail protein Pb4
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MITNTQPAKMGIHQVVKGYRSLYFGHSIFVDRDVFGKAVWVDGVLRPTLLDTDNLYFIVDNLASGTEYNIQAAYYDQMVDAQLLGAQFGITLSDVQTVSTLVAPTIDSYDIIAEDVDVGVSPPVLNINLLGDGQDVEVQWSPANAQDWKTVYQGRFEPSISIANIPVGTVDVRVRGIVRYPSVDFIETSAWQMIGDLVLDWGYTPPSEPENLRFEVVKLAEPAERYDVKVYWDWERGSGANSREFVLWRTPKSKYDTVGWEDAEIINTGTSQSFLVVNHSYNLEYIYRVSVIAWGPEADNITYSLEETFTLDENTPIAENFSEETGIELNYAHIMGRLKDGGVWKQTFLVDAATGAVAIGIPDDNGRAPINFDPVNGIVNVDGQVISNEIVSASFVLANFTGQDNPRLYSAAKPIYEDPSQGIFLGYDDTDGKFKFDLGDDQRFIRWDGDELFISGNVKIVDPNRGDSTDLGQARVFLATVYRNGDSVPPSIPTNDTTYPPNAWTLNPQPRDEGEVTYASQGLVDQSTGELVDGENWGDPYQFSGSDGADGKDGNDGKDGNDGLNGELGPGSIIITLTNENLIPSTSAGKDADYLAQVGEPAKDGAVISYQGHLNQFVQHWIRESGSWIKFTVVVDGNQVVDGTLAAKKLQAKSITGDYISSSTKITAGSGNKVVVMDGVSATWALYAGNSYGPDAPFRVNRDGKLFATNAEIRGKITATQLIFEGGTPPWGDGSNDGAAGQVDTALADGTLYPDQDGLQIASGNYQAGVRGWAIDRNGNSEFNNTIVRGTMYATNGKFENVEITESCTIAGATYFTPVRHFRNVNKSVGTSETTIEEFEFDLGDVNNDFAILVSFDFQPTDDYSGIDNPNSAYGRIYVNNRQVHQSDLRAGYRGCCATVEGECVSWCDKTDFTGGWYYQRLLITPDNLIKGKNKVKFTMGYSGGRRYGNGARNSSRNIFLELVRDI
Physico‐chemical
properties
protein length:967 AA
molecular weight: 105910,64300 Da
isoelectric point:4,41465
aromaticity:0,10651
hydropathy:-0,34891

Domains

Domains [InterPro]
IPR057550
STR
10–94
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
100–189
IPR057551 DC_1191
BAV81289.1
1 967
Architecture
STR
STR
STR
STR 10-94 | STR 100-191 | STR 205-885 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAV81289.1
1 967
Domain Start End Length (AA) Confidence
N-terminal 1 213 213 0,9601
Central domain 214 762 550 0,1163
C-terminal 763 967 204 0,7608
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-213
Central
214-762
C-terminal
763-967

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VCPH
[NCBI] 		1674945 No lineage information
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAV81289.1 [NCBI]
Genbank nucleotide accession
AP014889 [NCBI]
CDS location
range 91304 -> 94207
strand -
CDS
ATGATTACAAACACGCAACCAGCCAAGATGGGGATTCATCAGGTAGTCAAGGGCTACCGTAGTCTCTACTTTGGCCACTCTATCTTCGTTGATAGGGACGTGTTCGGTAAAGCAGTGTGGGTTGACGGAGTCCTGAGACCCACTCTACTTGATACAGACAATCTGTATTTCATTGTAGATAACCTTGCTTCCGGCACAGAATACAACATTCAAGCAGCATACTATGACCAGATGGTGGATGCTCAGCTACTAGGTGCTCAGTTCGGTATCACATTATCGGATGTTCAAACAGTATCCACTCTAGTTGCCCCTACCATTGACAGCTACGACATTATAGCAGAAGACGTAGATGTAGGTGTTTCGCCTCCAGTGCTGAACATTAACCTTCTAGGTGATGGACAGGACGTAGAGGTACAGTGGTCTCCTGCTAATGCACAGGACTGGAAGACTGTATATCAAGGTCGATTTGAACCATCTATCTCTATCGCAAACATCCCGGTTGGTACTGTGGACGTACGAGTAAGGGGTATTGTTCGCTACCCTTCAGTTGACTTTATAGAGACGTCAGCATGGCAGATGATTGGGGACTTAGTTCTTGATTGGGGTTACACTCCACCATCTGAGCCTGAAAACTTACGCTTCGAAGTAGTTAAGTTAGCAGAGCCGGCGGAACGCTACGACGTTAAAGTTTACTGGGACTGGGAGCGCGGCTCTGGAGCTAACAGTAGAGAGTTTGTGCTATGGCGCACACCTAAATCCAAATACGACACAGTAGGTTGGGAAGATGCTGAGATCATCAACACAGGTACTAGCCAATCCTTCCTAGTAGTTAACCACTCCTACAACCTGGAGTATATTTACAGAGTATCAGTTATCGCTTGGGGACCTGAGGCTGACAACATCACGTACAGCTTAGAAGAGACCTTTACACTTGATGAGAACACTCCTATTGCGGAGAACTTCTCAGAAGAGACTGGTATTGAATTGAACTACGCACACATCATGGGTCGTCTAAAGGATGGCGGAGTCTGGAAGCAAACATTCTTAGTTGATGCTGCTACTGGTGCTGTTGCTATCGGTATCCCTGATGATAACGGTAGAGCCCCAATTAACTTTGACCCTGTAAATGGTATTGTTAACGTTGACGGGCAGGTAATCTCAAACGAGATTGTATCTGCAAGCTTCGTTCTAGCTAACTTTACTGGGCAGGACAACCCAAGACTTTATTCGGCTGCTAAGCCTATCTACGAAGACCCATCGCAAGGTATCTTCCTAGGTTACGACGACACAGACGGTAAATTCAAGTTTGACTTGGGTGACGACCAACGATTTATTCGCTGGGACGGTGACGAACTATTCATCTCCGGTAATGTTAAGATCGTAGACCCGAATCGTGGTGATTCTACAGACCTCGGACAGGCGCGAGTGTTCCTTGCAACTGTATATCGAAATGGTGACTCTGTTCCACCATCCATTCCTACGAATGACACTACTTACCCACCTAATGCTTGGACACTAAACCCACAACCACGTGATGAGGGTGAGGTTACATACGCTTCCCAAGGCCTTGTCGACCAGTCGACAGGAGAGCTTGTAGACGGGGAGAACTGGGGCGACCCATACCAATTCTCTGGTTCAGACGGAGCAGACGGTAAAGATGGTAACGACGGTAAGGATGGTAACGACGGTCTTAATGGTGAATTAGGTCCTGGTTCGATTATCATCACACTAACCAATGAGAACCTTATCCCTAGCACTAGCGCAGGTAAGGATGCTGACTATCTAGCTCAGGTTGGAGAGCCAGCAAAAGACGGTGCAGTAATCAGTTACCAAGGTCACTTAAACCAATTTGTACAACACTGGATTCGAGAATCAGGTTCTTGGATTAAGTTCACGGTTGTTGTAGATGGTAACCAAGTTGTAGATGGTACACTGGCAGCTAAGAAGCTACAGGCTAAGTCTATTACTGGTGACTACATTAGTTCATCTACTAAGATCACCGCAGGTTCCGGTAACAAGGTTGTAGTTATGGACGGTGTTAGTGCTACTTGGGCACTATACGCGGGTAACTCATACGGACCAGATGCGCCATTCAGGGTTAACAGAGATGGTAAGCTATTCGCTACCAACGCTGAGATCCGTGGTAAGATTACAGCTACTCAGCTAATCTTCGAAGGCGGAACACCACCTTGGGGTGACGGTTCCAACGACGGAGCAGCAGGACAGGTTGACACAGCTCTAGCGGATGGTACACTTTACCCTGACCAAGACGGCTTACAGATCGCTTCTGGTAACTACCAAGCAGGTGTTCGTGGTTGGGCTATCGACAGAAACGGTAACTCCGAGTTCAACAACACTATCGTACGAGGTACAATGTACGCTACTAACGGTAAGTTTGAAAACGTAGAGATTACTGAATCCTGTACGATTGCAGGAGCTACATACTTCACTCCGGTTAGACACTTCCGAAACGTAAACAAGTCTGTTGGTACTTCCGAGACCACGATCGAAGAGTTCGAATTCGATCTAGGTGATGTTAATAATGACTTCGCAATCTTGGTTAGTTTTGACTTCCAACCTACAGATGACTACAGCGGTATCGACAACCCTAACAGTGCTTACGGACGTATTTACGTTAACAACAGACAGGTTCACCAATCGGACTTACGTGCCGGTTACCGCGGATGTTGTGCTACTGTAGAGGGTGAGTGTGTATCTTGGTGTGACAAGACAGACTTCACTGGTGGTTGGTACTACCAAAGACTACTTATTACCCCTGACAACCTAATCAAGGGTAAGAACAAAGTAAAATTCACGATGGGTTACTCAGGCGGCCGTAGGTACGGTAACGGTGCACGTAACTCTTCTAGGAATATCTTCCTAGAGTTAGTAAGGGATATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0dcf01d5a9fb76718c3cc1101d63d4caf834209f977bc1f921c9f64083014236
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2836
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of marine phages isolated from coral reef seawater, Okinawa, Japan Ramphul,C., Suzuki,T., Dohra,H., Casareto,B.E., Yoshinaga,K. and Suzuki,Y. 2017-10 — GenBank