Protein

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Genbank accession
XPP57490.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,82
Protein sequence
MRVENLQAETTITENGARVYSPNNKPSASDIGALPLDGKPATSGVADTSKTLEAVDNRYVKPNTTGTANQKCIKPFFVDNSTFPSSGRPAGTYSDLLVLDTYGDGSGGRINAIAASKGNDAIYHVQGNYNSDSWSPAAKIYTSHNKPTAADVGAHPTSWKPVWNDVQGKPQYALRWPSWNEISGKPGSMPPNSHTHPWSQITGEPVYTQRWPNWNEVSGKPGNLLTQTTADTRYMSKTAKPDANTLDGQDSSFYRKGMLITQKTINVGGNANTYYPVVITGSAYNAWGRYNISRGYGEPAPNSWNSSTHRGGLTFSWEATGDTAWGGNDKNFRVLEFEESYTTMVAGMALSTSGMIVWLRGGNARYHVTGPVGVGQGVTVYLGNYTSSDKKVWVPRTNVNGKGSEIIARQFVRGSGQLYDLGNRVYSASNKPSAGDVGAYTKGEADGRYLGKNGSAASIRSHGRVTALSGSTVPPSGVRLIEAYSNGYPDTYGNVLQVGGSGSGEIFLGWSGTSGGHAPMYIRSKRDVSTSPWSGWARVYTTAQKPTLAELGAQATLSPENRRKITYGTGNPSGGASGDIYIQYK
Physico‐chemical
properties
protein length:585 AA
molecular weight: 62643,35620 Da
isoelectric point:9,36302
aromaticity:0,09915
hydropathy:-0,60103

Domains

Domains [InterPro]
DC_1002
STR
42–280
DC_1002 DC_2005
XPP57490.1
1 585
Architecture
STR
STR
STR 42-280 | STR 385-558 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPP57490.1
1 585
Domain Start End Length (AA) Confidence
N-terminal 1 251 251 0,6619
Central domain 252 450 200 0,4565
C-terminal 451 585 134 0,9413
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-251
Central
252-450
C-terminal
451-585

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Skimmer
[NCBI] 		3388595 Viruses >
Host Vibrio campbellii
[NCBI] 		680 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPP57490.1 [NCBI]
Genbank nucleotide accession
PQ768831.1 [NCBI]
CDS location
range 33800 -> 35557
strand +
CDS
ATGCGCGTAGAGAATTTACAAGCAGAAACAACAATAACTGAAAACGGGGCGAGAGTATACTCGCCTAATAATAAACCAAGCGCCTCTGATATAGGGGCACTACCTTTGGATGGCAAACCTGCTACTTCTGGGGTCGCTGATACTTCTAAAACACTAGAAGCAGTTGATAATAGATATGTAAAGCCAAACACTACTGGCACCGCTAACCAAAAATGTATTAAGCCATTCTTTGTGGATAATTCGACTTTCCCTTCCTCTGGGAGACCTGCGGGTACATACTCAGACCTACTAGTACTAGATACTTATGGTGACGGCAGCGGTGGTAGGATAAATGCCATAGCAGCTAGTAAAGGTAATGATGCTATTTACCACGTTCAGGGTAACTATAATAGTGATTCTTGGAGTCCTGCTGCCAAAATATACACCTCTCACAATAAACCAACAGCAGCAGATGTAGGTGCTCATCCAACTTCATGGAAGCCTGTTTGGAATGATGTACAGGGTAAGCCTCAGTACGCATTGCGTTGGCCTAGTTGGAATGAGATATCAGGCAAACCTGGTAGTATGCCACCTAACTCACATACCCACCCATGGTCTCAAATTACTGGTGAACCTGTATATACACAGCGCTGGCCAAACTGGAACGAGGTTTCTGGTAAGCCCGGTAATCTATTAACACAAACTACTGCCGATACTCGTTATATGAGTAAAACTGCAAAACCCGACGCCAATACTCTAGACGGGCAGGATTCTAGTTTTTATCGTAAAGGTATGTTAATAACACAGAAAACTATTAACGTTGGCGGTAATGCTAATACTTATTATCCTGTGGTTATTACCGGTTCCGCGTATAATGCATGGGGTAGATATAATATTAGCCGTGGATATGGTGAGCCTGCTCCTAATAGTTGGAACAGCTCAACTCATAGAGGTGGTTTAACTTTCTCCTGGGAAGCCACAGGAGACACTGCCTGGGGAGGTAATGATAAAAATTTCAGGGTACTAGAGTTTGAGGAAAGCTACACTACTATGGTAGCAGGTATGGCGTTATCTACTAGTGGTATGATTGTATGGTTACGTGGTGGTAATGCTAGATACCATGTTACTGGTCCAGTTGGTGTTGGGCAGGGTGTTACTGTTTATCTTGGTAACTATACTTCTTCTGATAAGAAAGTATGGGTACCGAGAACCAATGTTAATGGTAAAGGCTCAGAAATCATAGCTAGGCAATTTGTACGTGGCTCTGGTCAGCTATACGACTTAGGTAATCGCGTTTACTCAGCGAGTAATAAACCTAGCGCTGGGGATGTTGGGGCATACACCAAAGGTGAAGCTGATGGGAGATATCTAGGAAAAAATGGTTCTGCAGCATCTATTAGAAGTCACGGTAGGGTTACGGCCTTATCAGGATCTACCGTACCACCAAGTGGGGTTAGATTAATCGAGGCGTACAGTAACGGATACCCAGATACTTATGGTAACGTATTGCAGGTAGGTGGTAGTGGTAGTGGTGAGATCTTCTTAGGGTGGTCAGGTACTTCTGGCGGACACGCCCCTATGTACATTCGCAGTAAAAGAGATGTAAGCACATCACCTTGGTCTGGGTGGGCTAGAGTATATACTACAGCACAGAAACCCACACTAGCAGAGTTAGGTGCTCAAGCTACTTTGAGCCCAGAAAATAGACGCAAGATCACTTATGGTACTGGCAACCCTAGTGGCGGTGCTAGTGGTGATATTTATATTCAATATAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6c86c7641e82caf68557028c4b4df5e8eed8db5676f0d30a81ac0be3e8afba35
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6155
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50