Protein

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Genbank accession
XJW12927.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MALDNGQYIKELNDALPLNQDPRNEGAGQIRAVKTALKNSFPNVDKQVGASADRMNAIFNTPVENPIXGIIMWEDPFNLPSGWALCDGGTYNGVPTPDLRNKFIKGWGTQGAGSTGGNNAPDLTQHLQVENHKLTINEIPQHDHIGGWGESNAHAPGSQYPYGGIIIPGLWRGSHSTDADNNEMPYTSKTGGSASHPHNLLNKAGQPFDNQPEYYVLVFIKYVGVAI
Physico‐chemical
properties
protein length:227 AA
molecular weight: 24455,84080 Da
isoelectric point:5,52824
aromaticity:0,08407
hydropathy:-0,56018

Domains

Domains [InterPro]
DC_0147
STR
1–227
DC_0147
SSF88874
STR
62–220
SSF88874
XJW12927.1
1 227
Architecture
STR
STR 1-227
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Photobacterium phage PhCF1.2
[NCBI] 		3376961 Viruses >
Host Photobacterium ganghwense
[NCBI] 		320778 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XJW12927.1 [NCBI]
Genbank nucleotide accession
PQ521129 [NCBI]
CDS location
range 36175 -> 36858
strand -
CDS
ATGGCATTAGATAATGGYCAATATATCAAAGAGCTTAACGATGCTCTACCATTGAATCAAGACCCACGTAACGAAGGTGCTGGTCAGATTCGAGCTGTGAAGACAGCTCTTAAAAACTCCTTCCCTAACGTTGATAAACAGGTTGGTGCTTCAGCAGACCGTATGAACGCCATCTTTAATACCCCAGTTGAAAACCCAATTGKGGGTATTATCATGTGGGAAGACCCATTCAACTTGCCTAGTGGTTGGGCATTGTGTGATGGTGGTACATATAATGGTGTACCAACACCTGACCTTCGTAACAAGTTTATCAAAGGTTGGGGTACTCAAGGTGCTGGCTCTACTGGTGGTAACAACGCCCCAGACCTGACACAACACTTGCAGGTAGAGAACCACAAACTAACAATTAACGAGATTCCACAACACGACCACATTGGCGGTTGGGGTGAGAGTAACGCACATGCTCCCGGCTCACAATACCCTTATGGTGGTATTATTATTCCGGGTCTATGGCGTGGTTCACACTCTACTGATGCGGATAACAATGAAATGCCATACACGTCTAAGACTGGTGGTAGTGCATCTCACCCACACAACCTGTTGAATAAAGCTGGTCAACCATTTGACAACCAGCCAGAGTATTACGTTCTGGTATTCATCAAGTACGTTGGTGTTGCAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bb784046f945ef57112fc381a063100ae9949c11e680be2ce36079863c51c3a2
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7528
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic insights into PhCF1.2: A novel lytic bacteriophage targetting Photobacterium ganghwense Keerthi Babu,R., Sobhana,K.S., Aleena,A., Neethu,K.P., Jayasree,V.S., Grinson,G. and Gopalakrishnan,A. 2020-12-31 — GenBank