Protein

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Genbank accession
AHG23938.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MAGDRWVKVIKPNKSDILLTDIPGLHFLEWNIPSPVTNSQELELTGIDGVLPSRNTYGAFDLELLFYFAGTDSKDLNLFSQRMKSLVNERDPFYIVHSDMPRFKYAVNSAEIEYDKITVADMNFTIKFHCYKGYAESLYSTKHYSLSDDNWQFQSGLVTDEEIKYTFHSNGFKVFNGGDDEINPLYRHNLKIYINVDAPNGFTIRNKTNGTSLTYKGSIKKNRTFVINGIYSIIDNKRVGKDTDYGIITLEQGYNDIEIDGTSIGSAKCRFDFNFIYR
Physico‐chemical
properties
protein length:278 AA
molecular weight: 31908,48260 Da
isoelectric point:5,71484
aromaticity:0,13669
hydropathy:-0,43417

Domains

Domains [InterPro]
G3DSA:2.40.30.200
17–135
G3DSA:2.40.30.200
IPR008841
35–130
IPR008841
AHG23938.1
1 278
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SepS_SEP9
[NCBI] 		1434319 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 Bacteria > Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHG23938.1 [NCBI]
Genbank nucleotide accession
KF929199 [NCBI]
CDS location
range 22886 -> 23722
strand +
CDS
ATGGCAGGAGATAGATGGGTAAAGGTAATTAAGCCTAATAAAAGTGATATTTTATTAACAGACATTCCAGGTCTCCATTTTCTGGAATGGAATATCCCATCTCCTGTTACTAATTCACAAGAACTAGAATTAACAGGCATTGACGGTGTTCTTCCTAGTAGGAACACCTACGGTGCTTTTGATTTAGAATTGTTATTTTATTTTGCTGGAACAGATTCTAAAGATTTGAATTTATTCTCTCAAAGAATGAAAAGTCTAGTAAATGAGAGAGACCCTTTTTATATAGTTCATTCTGATATGCCTAGATTTAAATATGCTGTAAATTCAGCTGAAATAGAATATGATAAAATAACAGTAGCAGATATGAATTTCACAATTAAATTTCATTGCTATAAAGGATATGCAGAATCTTTGTACAGTACAAAACATTATAGTCTATCAGATGATAATTGGCAATTCCAAAGTGGATTAGTAACTGATGAGGAGATTAAATATACTTTCCATTCAAATGGATTTAAAGTCTTTAATGGTGGAGACGATGAAATTAACCCACTATATAGACATAATTTAAAAATATATATCAATGTAGATGCCCCAAACGGTTTTACTATTAGAAATAAAACAAACGGGACCTCTTTAACTTATAAAGGAAGTATTAAAAAGAATAGAACTTTTGTTATAAATGGAATTTATTCTATTATAGATAATAAAAGAGTTGGAAAAGATACTGATTACGGTATTATTACTTTAGAACAAGGATATAATGATATTGAAATAGATGGAACTTCAATAGGTTCAGCAAAATGTAGATTTGATTTTAACTTTATTTATAGATAA

Tertiary structure

PDB ID
7fca9b82488ce812ce4b0a3a3cdcf3678cb0788b64836b5ca0770423f045baa7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9160
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Staphylococcus epidermidis phage vB_SepS_SEP9 - a unique member of the Siphoviridae family Melo,L.D., Sillankorva,S., Ackermann,H.W., Kropinski,A.M., Azeredo,J. and Cerca,N. 2014 25303835 GenBank