Protein

View in Explore
Genbank accession
YP_009800998.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MAGLQLIRGIKIKKVSSRFTSSVPRHMREDGTSIVDTRIIKSAQLTVEAICPSIDEVEQVISLASDRESLLRVTSKGVVFENMMIQATSNMQSKEMLSGAPFQITFKQLLLQNVMPVSVSQAADSTTMDRGIQILNTARSNVQGLASSFKSRISGFF
Physico‐chemical
properties
protein length:157 AA
molecular weight: 17212,76450 Da
isoelectric point:9,79605
aromaticity:0,04459
hydropathy:0,02166

Domains

Domains [InterPro]
DC_1370
STR
2–156
DC_1370
IPR054442
ATT
33–147
IPR054442
YP_009800998.1
1 157
Architecture
STR
ATT
STR 2-32 | ATT 33-156 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Carpasina
[NCBI] 		2163636 Uroviricota > Caudoviricetes > Lindbergviridae > Carpasinavirus carpasina >
Host Xanthomonas campestris
[NCBI] 		339 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009800998.1 [NCBI]
Genbank nucleotide accession
NC_047962.1 [NCBI]
CDS location
range 16888 -> 17361
strand +
CDS
ATGGCTGGATTGCAGCTTATCCGTGGCATAAAAATTAAAAAAGTCTCATCCAGGTTCACATCCTCCGTTCCAAGGCATATGCGAGAGGATGGCACTTCAATCGTAGACACAAGAATAATCAAGAGCGCTCAATTGACTGTTGAGGCGATATGCCCTTCAATTGATGAAGTCGAGCAAGTAATATCGCTGGCGTCTGACCGGGAATCTCTTCTCAGAGTAACATCAAAAGGTGTTGTTTTTGAGAATATGATGATTCAAGCAACGTCAAACATGCAGTCAAAAGAGATGTTATCTGGCGCCCCTTTCCAAATAACATTCAAACAGTTGTTATTGCAGAATGTGATGCCGGTGTCAGTATCTCAGGCGGCAGATTCGACAACCATGGACAGGGGGATTCAAATTTTGAACACTGCCAGGAGCAATGTTCAAGGCTTGGCATCCTCTTTCAAGTCTAGAATATCTGGGTTCTTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
9daf1ae70af898b960e3866e36fd2501e48884bb0225d89f12cc951a7aa1dc3f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6757
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Carstens,A.B., Djurhuus,A.M. and Hansen,L.H. 2021 — GenBank